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[netCDF #NJI-923427]: query

Hello,

You will want to address this by setting the CFLAGS, LDFLAGS environmental 
variables.  For example, if the hdf5 library was installed using prefix 
$HOME/local, you would first set/modify CFLAGS and LDFLAGS as follows:

    $ export CFLAGS="-I$HOME/local/include"
    $ export LDFLAGS="-L$HOME/local/lib"

If libhdf5 had been built as a shared library, it's likely that you would need 
to also set the following:

    $ export LD_LIBRARY_PATH="$HOME/local/lib"

I hope this helps, have a great day,

-Ward

> Greetings,
> 
> I am attempting to compile netcdf and it seems there are issues finding hdf5.
> 
> With most configure scripts now-a-days, a simple --with-hdf5=dir would point 
> the software in the needed direction.
> 
> Unfortunately, I do not see such an option.  Could you please recommend the 
> designed method?
> 
> 
> 
> 1137  2017-06-29 17:17:19 ../netcdf-4.4.1.1/configure --help
> 1138  2017-06-29 17:21:12 ls
> 1139  2017-06-29 17:21:37 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf
> 1140  2017-06-29 17:21:55 ../netcdf-4.4.1.1/configure --help
> 1141  2017-06-29 17:22:14 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf
> 1142  2017-06-29 17:22:50 grep -i hdf5 ../netcdf-4.4.1.1/configure
> 1143  2017-06-29 17:23:03 grep -i hdf5 ../netcdf-4.4.1.1/configure | grep with
> 1144  2017-06-29 17:23:15 grep -i hdf5 ../netcdf-4.4.1.1/configure | grep HDF5
> 1145  2017-06-29 17:26:48 export HDF5=$HOME/OTHER
> 1146  2017-06-29 17:26:56 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf
> 1147  2017-06-29 17:27:14 vi config.log
> 1148  2017-06-29 17:28:28 export 
> LD_LIBRARY_PATH="$HOME/OTHER/lib:$LD_LIBRARY_PATH"
> 1149  2017-06-29 17:28:33 env | grep CPATH
> 1150  2017-06-29 17:28:41 env | grep C_INC
> 1151  2017-06-29 17:28:58 export 
> CPATH=/opt/sgi/mpt/mpt-2.15/include:$HOME/OTHER/include
> 1152  2017-06-29 17:29:01 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf
> 1153  2017-06-29 17:29:20 vi ../netcdf-4.4.1.1/configure
> 1154  2017-06-29 17:36:48 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf 
> --with-netcdf=$HOME/OTHER
> 1155  2017-06-29 17:37:36 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf 
> --with-hdf5=$HOME/OTHER
> 1156  2017-06-29 17:40:58 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf
> 1157  2017-06-29 17:47:57 export HDF5_ROOT=$HOME/OTHER
> 1158  2017-06-29 17:47:58 ../netcdf-4.4.1.1/configure 
> --prefix=$HOME/WRF/OTHER --enable-mmap --enable-fsync --enable-jna 
> --enable-dynamic-loading --enable-hdf4 --enable-hdf4-file-tests 
> --enable-extra-example-tests --enable-parallel-tests --enable-logging 
> --disable-dap-remote-tests --enable-extra-tests --enable-large-file-tests 
> --enable-benchmarks --enable-shared --enable-mmap --enable-pnetcdf
> 1159  2017-06-29 17:49:10 history
> 
> 
> FYI:
> 
> 1120  2017-06-29 17:08:28 ../hdf5-1.8.19/configure --prefix=$HOME/WRF/OTHER 
> -enable-dependency-tracking --enable-hl --enable-shared --enable-production 
> --enable-metadata-trace-file --enable-instrument --enable-using-memchecker 
> --enable-parallel
> 
> I am attempting all this for compiling WRF.  The compiled packages are 
> software group provides does not feature all the bells and whistles...
> 
> Because this was missing from one of the attempts: netcdf.inc.
> 
> Thanks!
> Mike
> 
> 
> 
> 
> ---------------------------------------------------------------------------------------------------------------------------------------
> Michael Busse                      Email: address@hidden
> ARL/CISD/HPCS/CSB              Vmail: 410-278-0615
> Smail: U.S. Army Research Laboratory
> ATTN: RDRL-CIH-S (M. Busse - B120, C313)
> #include <stddisclm.h>                        Aberdeen Proving Ground, MD 
> 21005-5067
> ---------------------------------------------------------------------------------------------------------------------------------------
> 
> 
> 


Ticket Details
===================
Ticket ID: NJI-923427
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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