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[netCDF #JSM-727830]: NetCDF-4.3.3.1 building problem , 4 fails.

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  • Subject: [netCDF #JSM-727830]: NetCDF-4.3.3.1 building problem , 4 fails.
  • Date: Tue, 21 Apr 2015 09:14:50 -0600
Hello,

From the test-suite.log you provided, I see the following:

----

FAIL: tst_h_scalar
==================

HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 47823110266816:
  #000: ../../../src/H5T.c line 1595 in H5Tcreate(): unable to create type
    major: Datatype
    minor: Unable to initialize object
  #001: ../../../src/H5T.c line 2970 in H5T_create(): type class is not 
appropriate - use H5Tcopy()
    major: Datatype
    minor: Feature is unsupported

*** Create file with datasets & attributes that have scalar dataspaces...Sorry! 
Unexpected result, tst_h_scalar.c, line: 123

----

It appears that, in addition to HDF5.1.8.13, you have an older HDF5 install, 
version 1.8.4-patch1, that is being picked up at runtime.  You will need to 
uninstall this older version, or move it to a location off the LD_LIBRARY_PATH.

I hope this helps,

-Ward


> Hi,
> 
> I am trying to build
> 
> NetCDF-4.3.3.1.
> I have installed HDF5.1.8.13 and Zlib-1.2.8 with 100% pass.
> (Which are installed in /home/pothana/software/local/)
> System Information : Ubuntu 12.04.5 LTS, GCC-4.6.3
> 
> 
> I configured and build as follows
> 
> CPPFLAGS=-I/home/pothana/software/local/include
> LDFLAGS=-L/home/pothana/software/local/lib ./configure
> --prefix=/home/pothana/software/local --enable-shared
> 
> make check install
> 
> I have got 4 fails.
> Please find the attched file
> s
> "test-suite.log"
> , "config.log"
> and terminal output.
> 
> ############## TERMINAL OUTPUT #########################
> PASS: run_tests.sh
> PASS: tst_64bit.sh
> PASS: ctest
> PASS: ctest64
> PASS: tst_output.sh
> PASS: tst_lengths.sh
> PASS: tst_calendars.sh
> PASS: tst_utf8
> PASS: run_utf8_tests.sh
> PASS: tst_nccopy3.sh
> PASS: tst_charfill.sh
> PASS: tst_iter.sh
> PASS: tst_formatx3.sh
> PASS: tst_bom.sh
> PASS: tst_create_files
> PASS: tst_group_data
> PASS: tst_enum_data
> PASS: tst_opaque_data
> PASS: tst_string_data
> PASS: tst_vlen_data
> PASS: tst_comp
> PASS: tst_comp2
> PASS: tst_nans
> PASS: tst_special_atts
> PASS: tst_netcdf4.sh
> PASS: tst_h_rdc0
> PASS: tst_unicode
> PASS: tst_fillbug
> PASS: tst_fillbug.sh
> PASS: tst_netcdf4_4.sh
> PASS: tst_compress
> PASS: tst_nccopy4.sh
> PASS: tst_grp_spec.sh
> PASS: tst_mud.sh
> FAIL: tst_h_scalar
> FAIL: tst_h_scalar.sh
> PASS: tst_formatx4.sh
> PASS: tst_bug324
> FAIL: tst_ncgen4_classic.sh
> FAIL: tst_ncgen4.sh
> make[6]: Entering directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make  all-recursive
> make[7]: Entering directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> Making all in cdl
> make[8]: Entering directory
> `/home/pothana/software/netcdf-4.3.3.1/ncdump/cdl'
> make[8]: Nothing to be done for `all'.
> make[8]: Leaving directory
> `/home/pothana/software/netcdf-4.3.3.1/ncdump/cdl'
> Making all in expected
> make[8]: Entering directory
> `/home/pothana/software/netcdf-4.3.3.1/ncdump/expected'
> make[8]: Nothing to be done for `all'.
> make[8]: Leaving directory
> `/home/pothana/software/netcdf-4.3.3.1/ncdump/expected'
> make[8]: Entering directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make[8]: Nothing to be done for `all-am'.
> make[8]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make[7]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make[6]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> ============================================================================
> Testsuite summary for netCDF 4.3.3.1
> ============================================================================
> # TOTAL: 40
> # PASS:  36
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  4
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See ncdump/test-suite.log
> Please report to address@hidden
> ============================================================================
> make[5]: *** [test-suite.log] Error 1
> make[5]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make[4]: *** [check-TESTS] Error 2
> make[4]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make[3]: *** [check-am] Error 2
> make[3]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make[2]: *** [check-recursive] Error 1
> make[2]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make[1]: *** [check] Error 2
> make[1]: Leaving directory `/home/pothana/software/netcdf-4.3.3.1/ncdump'
> make: *** [check-recursive] Error 1
> pothana@pothana-VPCEH2BGN:~/software/netcdf-4.3.3.1$
> 
> 


Ticket Details
===================
Ticket ID: JSM-727830
Department: Support netCDF
Priority: Normal
Status: Closed