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[netCDF #RQB-854711]: MPI/IO with unlimited dimensions

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  • Subject: [netCDF #RQB-854711]: MPI/IO with unlimited dimensions
  • Date: Mon, 05 Aug 2013 16:09:38 -0600
Hi Sebastian,

Could you tell us if this recently fixed bug sounds like what you
found?

  https://bugtracking.unidata.ucar.edu/browse/NCF-250

If so, the fix will be in netCDF release 4.3.1, a release candidate 
for which will soon be announced.

--Russ

> Hi everybody,
> 
> I just figured out that using collective MPI/IO in variables with
> unlimited dimensions can lead to deadlocks or wrong files.
> 
> I have attached a small example program which can reproduce deadlock
> (and wrong output files depending on the variable "count").
> 
> Did I do anything wrong or is this a known bug?
> 
> My configuration:
> hdf5 1.8.11
> netcdf 4.3
> openmpi (default ubuntu installation)
> 
> Compile command:
> mpicxx test.cpp -I/usr/local/include -L/usr/local/lib -lnetcdf -lhdf5_hl
> -lhdf5 -lz
> (netcdf and hdf5 are installed in /usr/local)
> 
> Best regards,
> Sebastian
> 
> --
> Sebastian Rettenberger, M.Sc.
> Technische Universität München
> Department of Informatics
> Chair of Scientific Computing
> Boltzmannstrasse 3, 85748 Garching, Germany
> http://www5.in.tum.de/
> 
> 
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: RQB-854711
Department: Support netCDF
Priority: Normal
Status: Closed