[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[netCDF #FYC-635019]: netCDF make check fail at t_nc
- Subject: [netCDF #FYC-635019]: netCDF make check fail at t_nc
- Date: Thu, 21 Jun 2012 12:58:47 -0600
Chen,
> Thank you for the help! You are right, it was the incompatable of the older
> version of netcdf with my 64 bits opensuse 11.4.
>
> I reinstalled libnetcdf-devel, version 4.0.1-9.3 via yast2 on my opensuse
> laptop. Now, t_nc passed the make check. But,
I don't know what "version 4.0.1-9.3" refers to. Is this netCDF version 4.0.1,
or are
you still working with netCDF version 3.6.3? The line numbers in program files
often
change between versions, so knowing the version of the source distribution is
helpful.
> I got the tst_name error as following. Is it also related to the my 64 bits
> setup?
I don't think so. If I can trust the line numbers, they seem to be referring
to tests
of creating a new dimension, variable, and attribute using an invalid Unicode
UTF-8
name, to make sure that the netCDF functions return the error code NC_EBADNAM
in that
case. It has nothing to do with 32-bit versus 64-bit, just looking at bytes and
character encodings.
> *** testing names with file tst_names.nc...
> *** switching to netCDF classic format...Sorry! Unexpected result,
> tst_names.c, line: 256
> Sorry! Unexpected result, tst_names.c, line: 259
> Sorry! Unexpected result, tst_names.c, line: 262
> Sorry! Unexpected result, tst_names.c, line: 265
> 4 failures
> *** switching to netCDF 64-bit offset format...Sorry! Unexpected result,
> tst_names.c, line: 256
> Sorry! Unexpected result, tst_names.c, line: 259
> Sorry! Unexpected result, tst_names.c, line: 262
> Sorry! Unexpected result, tst_names.c, line: 265
> 4 failures
> 8 errors detected! Sorry!
> FAIL: tst_names
> =========================================
> 1 of 5 tests failed
> Please report to address@hidden
> =========================================
> make[2]: *** [check-TESTS] Error 1
> make[2]: Leaving directory `/home/testGMT/netcdf-3.6.3/nc_test'
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory `/home/testGMT/netcdf-3.6.3/nc_test'
> make: *** [check-recursive] Error 1
>
> Any ideas?
No, those errors are puzzling. Just to make sure, could you try
running "make distclean" before building the netCDF libraries
again, or re-install a later version of netCDF, if available?
For GMT, you don't need netCDF-4, so you can build from the latest
version using the "--disable-netcdf-4" option to configure.
If yast doesn't have a version more recent than 4.0.1 or 3.6.3, then
maybe you should try building from source yourself, using these
instructions:
http://www.unidata.ucar.edu/software/netcdf/docs/
--Russ
> From: Unidata netCDF Support [address@hidden]
> Sent: Wednesday, June 20, 2012 5:25 AM
> To: Chen Lidong
> Cc: address@hidden
> Subject: [netCDF #FYC-635019]: netCDF make check fail at t_nc
>
> Hi Chen,
>
> > I am trying to install GMT 4.5.8 on my opensuse 12.1 laptop, I got the
> > following errors:
> >
> > make[2]: Entering directory `/home/testGMT/netcdf-3.6.3/libsrc'
> > make t_nc
> > make[3]: Entering directory `/home/testGMT/netcdf-3.6.3/libsrc'
> > make[3]: `t_nc' is up to date.
> > make[3]: Leaving directory `/home/testGMT/netcdf-3.6.3/libsrc'
> > make check-TESTS
> > make[3]: Entering directory `/home/testGMT/netcdf-3.6.3/libsrc'
> > /home/testGMT/netcdf-3.6.3/libsrc/.libs/t_nc: error while loading shared
> > libraries: libnetcdf.so.4: cannot open shared object file: No such file
> > or directory
> > FAIL: t_nc
> >
> > 1 of 1 tests failed
> > Please report to address@hidden
>
> This just looks like a failure to find the netCDF library shared object.
> This could occur because an older netCDF shared library was installed that
> was a 32-bit library and you are trying to link a 64-bit program with it,
> or vice-versa. Another possibility is that you need to set the environment
> variable LD_LIBRARY_PATH to include the lib directory where netCDF is
> installed before trying to build GMT.
>
> If none of those suggestions help, I can only suggest you contact GMT support.
>
> --Russ
>
> > make[3]: *** [check-TESTS] Error 1
> > make[3]: Leaving directory `/home/testGMT/netcdf-3.6.3/libsrc'
> > make[2]: *** [check-am] Error 2
> > make[2]: Leaving directory `/home/testGMT/netcdf-3.6.3/libsrc'
> > make[1]: *** [check] Error 2
> > make[1]: Leaving directory `/home/testGMT/netcdf-3.6.3/libsrc'
> > make: *** [check-recursive] Error 1
> >
> >
> > The following is the GMT4param.txt:
> >
> > # This script was created by install_gmt.sh on
> > #
> > # Mon Jun 18 14:03:34 SGT 2012
> > #
> > # Do NOT add any spaces around the = signs. The
> > # file MUST conform to Bourne shell syntax
> > #---------------------------------------------
> > # GMT VERSION TO INSTALL
> > #---------------------------------------------
> > VERSION=4.5.8
> > #---------------------------------------------
> > # SYSTEM UTILITIES
> > #---------------------------------------------
> > GMT_expand=
> > GMT_make=make
> > #---------------------------------------------
> > # NETCDF SECTION
> > #---------------------------------------------
> > netcdf_ftp=y
> > netcdf_install=y
> > netcdf_path=
> > passive_ftp=y
> > #---------------------------------------------
> > # GDAL SECTION
> > #---------------------------------------------
> > use_gdal=y
> > gdal_path=/usr/local
> > #---------------------------------------------
> > # GMT & GSHHS FTP SECTION
> > #---------------------------------------------
> > GMT_ftp=y
> > GSHHS_ftp=y
> > GMT_inst_gmt=y
> > GMT_inst_gshhs=y
> > GMT_ftpsite=1
> > #---------------------------------------------
> > # GMT SUPPLEMENTS SELECT SECTION
> > #---------------------------------------------
> > GMT_suppl_mex=d
> > GMT_suppl_xgrid=d
> > #---------------------------------------------
> > # GMT ENVIRONMENT SECTION
> > #---------------------------------------------
> > GMT_si=y
> > GMT_ps=y
> > GMT_prefix=/usr/lib/gmt
> > GMT_bin=/usr/lib/gmt/bin
> > GMT_lib=/usr/lib/gmt/lib
> > GMT_share=/usr/lib/gmt/share
> > GMT_include=/usr/lib/gmt/include
> > GMT_man=/usr/lib/gmt/man
> > GMT_doc=/usr/lib/gmt/share/doc/gmt
> > GMT_sharedir=/usr/lib/gmt/share
> > #---------------------------------------------
> > # COMPILING & LINKING SECTION
> > #---------------------------------------------
> > GMT_sharedlib=n
> > GMT_cc=
> > GMT_64=
> > GMT_univ=n
> > GMT_triangle=y
> > GMT_flock=n
> > #---------------------------------------------
> > # TEST & PRINT SECTION
> > #---------------------------------------------
> > GMT_run_examples=y
> > GMT_delete=n
> > #---------------------------------------------
> > # MEX SECTION
> > #---------------------------------------------
> > MATDIR=/usr/local/matlab
> > mex_mdir=
> > mex_xdir=
> >
> >
> > I added the following entries in my .bashrc file:
> >
> > export PATH=/usr/lib/gmt/bin:/usr/lib/gmt/lib:/usr/lib/gmt/include:$PATH
> > export GMTHOME=/usr/lig/gmt
> > export GMTPATH=/usr/lib/gmt/bin
> > export MANPATH=/usr/share/man:/usr/lib/gmt/man:$MANPATH
> > export LD_LIBRARY_PATH=/usr/lib/gmt:$LD_LIBRARY_PATH
> >
> > Please help! many thanks!
> >
> > Li
> >
> > CONFIDENTIALITY:This email is intended solely for the person(s) named and
> > may be confidential and/or privileged.If you are not the intended
> > recipient,please delete it,notify us and do not copy,use,or disclose its
> > content.
> >
> > Towards A Sustainable Earth:Print Only When Necessary.Thank you.
> >
>
> Russ Rew UCAR Unidata Program
> address@hidden http://www.unidata.ucar.edu
>
>
>
> Ticket Details
> ===================
> Ticket ID: FYC-635019
> Department: Support netCDF
> Priority: Normal
> Status: Closed
>
>
Russ Rew UCAR Unidata Program
address@hidden http://www.unidata.ucar.edu
Ticket Details
===================
Ticket ID: FYC-635019
Department: Support netCDF
Priority: Normal
Status: Closed