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[netCDF #LOK-342881]: make check fails

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  • Subject: [netCDF #LOK-342881]: make check fails
  • Date: Thu, 08 Sep 2011 10:26:40 -0600
Greetings Grant!

Sorry for the silence on this end. Have you found a solution to getting netCDF 
to work? I see you are trying to build the parallel version of netCDF - did you 
use this as a guide: 
http://www.unidata.ucar.edu/software/netcdf/docs/netcdf-install/parallel.html? 
Also, I'm not sure why your compiler failed when you used -O2. Did you use 
minus uppercase o 2 (-O2), or minus lowercase o 2 (-o2)? It should be with an 
uppercase O. When you compiled with the -fno-second-underscore flag, did the 
output from readelf -Ws show that the trailing underscore was removed?

Sean


> /users/gmackey/ADAMPROJ/openmpi/build/bin/mpif90 -show
> gfortran -I/users/gmackey/ADAMPROJ/openmpi/build/include -pthread -m64
> -I/users/gmackey/ADAMPROJ/openmpi/build/lib -m64
> -L/users/gmackey/ADAMPROJ/openmpi/build/lib -lmpi_f90 -lmpi_f77 -lmpi
> -lopen-rte -lopen-pal -lrdmacm -libverbs -lpsm_infinipath -lnuma -ldl
> -lnsl -lutil
> 
> 
> thanks
> 
> - Grant
> 
> > Can you tell me the output from the following command?
> >
> > /users/gmackey/ADAMPROJ/openmpi/build/bin/mpif90 -show
> >
> > Thanks!
> >
> > Sean
> >
> >> Hey Sean,
> >>
> >> so I added the flags you recommended (except for -o2 which caused a f90
> >> build error during config) but it still fails on the make check
> >>
> >> I've attached the logs
> >>
> >> - Grant
> >>
> >> > Greetings Grant,
> >> >
> >> > You can always try setting the FFLAGS and FCFLAGS variables with the
> >> > -fno-second-underscore flag at the same time you run configure, like
> >> this:
> >> >
> >> > FFLAGS="-g -O2 -fno-second-underscore" FCFLAGS="-g -O2
> >> > -fno-second-underscore" ./configure <options>
> >> >
> >> > Just make sure to do a make clean before re-configuring.
> >> >
> >> > If that does not work, please send me the logs for configure, make and
> >> > make check.
> >> >
> >> > Cheers!
> >> >
> >> > Sean
> >> >
> >> >
> >> >> Hi all,
> >> >>
> >> >> I'm finding myself in a similar situation to this ticket "[netCDF
> >> >> #AIX-484936]: netcdf-4.1.2 build error" that I found in the mailing
> >> >> archives. I took the suggestions from the thread but still no dice, I
> >> >> can't get the nf* check to pass.
> >> >>
> >> >> readelf -Ws
> >> >> /users/gmackey/ADAMPROJ/netcdf/netcdf-4.1.3/fortran/.libs/libnetcdff.so
> >> >> |
> >> >> grep nf_open
> >> >> 140: 0000000000000000     0 NOTYPE  GLOBAL DEFAULT  UND nf_open_
> >> >> 234: 0000000000000000     0 NOTYPE  GLOBAL DEFAULT  UND nf_open_par_
> >> >> 716: 000000000001b000   272 FUNC    GLOBAL DEFAULT   10 nf_open_par__
> >> >> 765: 0000000000010cd0   231 FUNC    GLOBAL DEFAULT   10 nf_open__
> >> >> 298: 000000000001b000   272 FUNC    GLOBAL DEFAULT   10 nf_open_par__
> >> >> 411: 0000000000000000     0 NOTYPE  GLOBAL DEFAULT  UND nf_open_
> >> >> 596: 0000000000000000     0 NOTYPE  GLOBAL DEFAULT  UND nf_open_par_
> >> >> 841: 0000000000010cd0   231 FUNC    GLOBAL DEFAULT   10 nf_open__
> >> >>
> >> >> Any ideas?
> >> >>
> >> >> thanks much
> >> >>
> >> >> - Grant
> >> >>
> >> >>
> >> >
> >> >
> >> > Ticket Details
> >> > ===================
> >> > Ticket ID: LOK-342881
> >> > Department: Support netCDF
> >> > Priority: Normal
> >> > Status: Closed
> >> >
> >> >
> >>
> >>
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: LOK-342881
> > Department: Support netCDF
> > Priority: Normal
> > Status: Closed
> >
> >
> 
> 


Ticket Details
===================
Ticket ID: LOK-342881
Department: Support netCDF
Priority: High
Status: Closed