[netCDF #XPO-276613]: compiling f90 and including netcdf

Interesting. What libnetcdf* files do you have in /usr/local/lib? Do you see 
libnetcdff within your netcdf build directory (<build-dir>/fortran/.libs/)?

> Hello,
> 
> I decided to do the make install and it seemed to work.
> 
> The serial code still works.  So I haven't lost that.
> 


> My make file has the line that you suggested.  However, when I try and make 
> all I get that each file compiles ok (better than before) but it cannot find 
> -lnetcdff.  Indeed, it's not in my /usr/local/lib.
> 
> ld: library not found for -lnetcdff
> collect2: ld returned 1 exit status
> make: *** [rsw] Error 1
> 
> When I configured netcdfi I told it to use a fortran compiler and it seems to 
> know that.  Any ideas why it didn't build the library?
> 
> Francis
> 
> On 2011-07-28, at 2:19 PM, Unidata netCDF Support wrote:
> 
> > Greetings Francis,
> >
> > I looked through your logs and everything looks ok. You could always do a 
> > `make clean` and start from the beginning, but this time set the 
> > --prefix=/where/ever/you/want when running netcdf config to install the 
> > libs in a different directory. Just be sure to update
> >
> > NETCDF = -L/usr/local/lib -lnetcdff -lnetcdf -L/sw/lib -lcurl
> >
> > to point to the custom install directory rather than /usr/local/lib.
> >
> > Let me know how it goes,
> >
> > Sean
> >
> >
> >> Hello Sean,
> >>
> >> I am a bit hesitate to make install the netcdf for fear that it won't work 
> >> serially anymore.  I thought I could compile some netcdf code using these 
> >> libraries but 1) I'm not sure where they are and 2) because I'm using 
> >> fftw3 that is in /usr/local/lib, there's the old netcdf that is also there 
> >> and I'm not sure how to tell it to use one or the other.
> >>
> >> Any advice?
> >>
> >> Francis
> >>
> >> On 2011-07-27, at 2:41 PM, Unidata netCDF Support wrote:
> >>
> >>> Francis,
> >>>
> >>> Try re-running config, but add lt_cv_ld_force_load=no like this:
> >>>
> >>> lt_cv_ld_force_load=no ./configure <whatever options you added>
> >>>
> >>> To log make and make check, do the following:
> >>>
> >>> make >& make.out&
> >>>
> >>> Then, to watch things progress, you can do:
> >>>
> >>> tail -f make.out
> >>>
> >>> You can do the exact same thing for make check (just be sure to rename 
> >>> make.out to make_check.out or something like that).
> >>>
> >>> Make sure to do a `make clean` before trying the above steps.
> >>>
> >>> Cheers!
> >>>
> >>> Sean
> >>>
> >>>
> >>>> Hello Sean,
> >>>>
> >>>> Here is a copy of my config.log.  I don't see where the make and make 
> >>>> check were stored.  If you tell me I'll send them.  Otherwise, I'll redo 
> >>>> the make and make check and send you the output.
> >>>>
> >>>> Thanks,
> >>>> Francis
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> On 2011-07-27, at 1:15 PM, Unidata netCDF Support wrote:
> >>>>
> >>>>> Francis,
> >>>>>
> >>>>> Would you mind sending me the configure, make, and make check logs from 
> >>>>> your desktop build?
> >>>>>
> >>>>> Thanks!
> >>>>>
> >>>>> Sean
> >>>>>
> >>>>>> Hello Sean,
> >>>>>>
> >>>>>> Thanks for the advice.  I'm testing this out on a MacPro and  MacBook 
> >>>>>> Pro.
> >>>>>>
> >>>>>> On my laptop it compiles fine, thanks!   The nc-config didn't say that 
> >>>>>> but now I know better.
> >>>>>>
> >>>>>> On my desktop it no longer complains about not finding netcdf.mod 
> >>>>>> (that's progress) but now it doesn't find netcdff.  When I look in 
> >>>>>> usr/local/lib I see netcdf and netcdf_c++ but no netcdff.  Maybe I 
> >>>>>> needed to do something to include it when I built netcdf 4.1.1?
> >>>>>>
> >>>>>> Cheers,
> >>>>>> Francis
> >>>>>>
> >>>>>> On 2011-07-27, at 11:48 AM, Unidata netCDF Support wrote:
> >>>>>>
> >>>>>>> Greetings Francis!
> >>>>>>>
> >>>>>>> You seem to be missing the netcdf fortran library (-lnetcdff) in your 
> >>>>>>> NETCDF variable. It should be something like:
> >>>>>>>
> >>>>>>> NETCDF = -L/usr/local/lib -lnetcdff -lnetcdf -L/sw/lib -lcurl
> >>>>>>>
> >>>>>>> If you need to see what lib flags you should use, check out the 
> >>>>>>> program nc-config:
> >>>>>>>
> >>>>>>> nc-config --flibs
> >>>>>>>
> >>>>>>> There are all kinds of goodies that can be found using 
> >>>>>>> nc-config...check out
> >>>>>>>
> >>>>>>> nc-config --help
> >>>>>>>
> >>>>>>> for more info.
> >>>>>>>
> >>>>>>> Please let me know if adding -lnetcdff works for you.
> >>>>>>>
> >>>>>>> Cheers!
> >>>>>>>
> >>>>>>> Sean
> >>>>>>>
> >>>>>>>> Hello,
> >>>>>>>>
> >>>>>>>> Since my first email I've made some progress, but I'm still having 
> >>>>>>>> some difficulty.
> >>>>>>>>
> >>>>>>>> Since last I wrote I have figured out that netcdf does seem to be 
> >>>>>>>> installed correctly because I can run some f90 programs that call 
> >>>>>>>> netcdf.  At least in serial.
> >>>>>>>>
> >>>>>>>> For my serial problem my makefile looks like
> >>>>>>>>
> >>>>>>>> FC      = /sw/bin/gfortran
> >>>>>>>> FFLAGS  = -g -O2 -I/usr/local/include
> >>>>>>>> MATH    = -lm
> >>>>>>>> NETCDF  = -L/usr/local/lib -lnetcdf -L/sw/lib -lcurl
> >>>>>>>> FFT     = -L/usr/local/lib -lfftw3
> >>>>>>>>
> >>>>>>>> all:rsw
> >>>>>>>>
> >>>>>>>> %.o: %.f90
> >>>>>>>> $(FC) $(FFLAGS) -c $<
> >>>>>>>>
> >>>>>>>> rsw: $(OBJ)
> >>>>>>>> $(FC) $(FFLAGS) -o rsw_nl.out $(OBJ) $(MATH) $(FFT) $(NETCDF)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> My MPI version is very similar and looks like this,
> >>>>>>>>
> >>>>>>>> FC      = /usr/local/bin/mpif90
> >>>>>>>> FFLAGS  = -g -O2 -I/usr/local/include
> >>>>>>>> MATH    = -lm
> >>>>>>>> NETCDF  = -L/usr/local/lib -lnetcdf -L/sw/lib -lcurl
> >>>>>>>> FFT     = -L/usr/local/lib -lfftw3
> >>>>>>>> MPI     = -L/usr/local/lib -lmpi
> >>>>>>>>
> >>>>>>>> all:rsw
> >>>>>>>>
> >>>>>>>> %.o: %.f90
> >>>>>>>> $(FC) $(FFLAGS) $(NETCDF) -c $<
> >>>>>>>>
> >>>>>>>> rsw: $(OBJ)
> >>>>>>>> $(FC) $(FFLAGS) -o rsw_nl.out $(OBJ) $(MATH) $(FFT) $(MPI) $(NETCDF)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> Unfortunately in this case it cannot find netcdf.mod
> >>>>>>>>
> >>>>>>>> /usr/local/bin/mpif90 -g -O2 -I/usr/local/include -L/usr/local/lib 
> >>>>>>>> -lnetcdf -L/sw/lib -lcurl -c save_fields.f90
> >>>>>>>> save_fields.f90:6.12:
> >>>>>>>>
> >>>>>>>> USE netcdf
> >>>>>>>> 1
> >>>>>>>> Fatal Error: Wrong module version '0' (expected '6') for file 
> >>>>>>>> 'netcdf.mod' opened at (1)
> >>>>>>>> make: *** [save_fields.o] Error 1
> >>>>>>>>
> >>>>>>>> even though there is a local copy of it in the directory,
> >>>>>>>>
> >>>>>>>> Do you have any ideas why I can use netcdf in serial but not in 
> >>>>>>>> parallel? I've tried restructuring my makefile but to no avail.
> >>>>>>>>
> >>>>>>>> Thanks,
> >>>>>>>> Francis
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> On 2011-07-20, at 10:54 AM, Unidata netCDF Support wrote:
> >>>>>>>>
> >>>>>>>>>
> >>>>>>>>> Francis Poulin,
> >>>>>>>>>
> >>>>>>>>> Your Ticket has been received, and a Unidata staff member will 
> >>>>>>>>> review it and reply accordingly. Listed below are details of this 
> >>>>>>>>> new Ticket. Please make sure the Ticket ID remains in the Subject: 
> >>>>>>>>> line on all correspondence related to this Ticket.
> >>>>>>>>>
> >>>>>>>>> Ticket ID: XPO-276613
> >>>>>>>>> Subject: compiling f90 and including netcdf
> >>>>>>>>> Department: Support netCDF
> >>>>>>>>> Priority: Normal
> >>>>>>>>> Status: Open
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>> The NetCDF libraries are developed at the Unidata Program 
> >>>>>>>>> Center/UCAR,
> >>>>>>>>> in Boulder, Colorado; we are funded primarily by the U.S. National
> >>>>>>>>> Science Foundation.
> >>>>>>>>>
> >>>>>>>>> All support requests are handled by the development team; no
> >>>>>>>>> dedicated support staff are funded at this time. For this reason
> >>>>>>>>> we cannot guarantee response times, nor can we resolve every support
> >>>>>>>>> issue, although we do our best to respond within 72 hours.
> >>>>>>>>>
> >>>>>>>>> It is in the nature of support requests that the same question is
> >>>>>>>>> asked many times. We urge you to search the support archives for
> >>>>>>>>> material relating to your support inquiry:
> >>>>>>>>>
> >>>>>>>>> http://www.unidata.ucar.edu/search.jsp?support&netcdf
> >>>>>>>>>
> >>>>>>>>> If you are having trouble building netCDF, please take a look at the
> >>>>>>>>> "Build Troubleshooter" section of the netCDF home page:
> >>>>>>>>>
> >>>>>>>>> http://www.unidata.ucar.edu/software/netcdf/
> >>>>>>>>>
> >>>>>>>>> Windows users should see the FAQ list:
> >>>>>>>>>
> >>>>>>>>> http://www.unidata.ucar.edu/software/netcdf/docs/faq.html#windows_netcdf4
> >>>>>>>>>
> >>>>>>>>> Complete documentation (including a tutorial, and sample programs in
> >>>>>>>>> C, Fortran, Java, and other programming languages) can be found on 
> >>>>>>>>> the
> >>>>>>>>> netCDF Documentation page:
> >>>>>>>>>
> >>>>>>>>> http://www.unidata.ucar.edu/software/netcdf/docs/
> >>>>>>>>>
> >>>>>>>>> If you resolve your issue through one of these methods, please send 
> >>>>>>>>> a
> >>>>>>>>> reply to this email letting us know that you no longer require
> >>>>>>>>> assistance. This will help us spend more time on netCDF development.
> >>>>>>>>>
> >>>>>>>>> Best regards,
> >>>>>>>>>
> >>>>>>>>> Unidata User Support
> >>>>>>>>
> >>>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>> Ticket Details
> >>>>>>> ===================
> >>>>>>> Ticket ID: XPO-276613
> >>>>>>> Department: Support netCDF
> >>>>>>> Priority: High
> >>>>>>> Status: Open
> >>>>>>
> >>>>>>
> >>>>>
> >>>>>
> >>>>> Ticket Details
> >>>>> ===================
> >>>>> Ticket ID: XPO-276613
> >>>>> Department: Support netCDF
> >>>>> Priority: High
> >>>>> Status: Open
> >>>>
> >>>>
> >>>>
> >>>
> >>>
> >>> Ticket Details
> >>> ===================
> >>> Ticket ID: XPO-276613
> >>> Department: Support netCDF
> >>> Priority: High
> >>> Status: Open
> >>
> >>
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: XPO-276613
> > Department: Support netCDF
> > Priority: High
> > Status: Open
> 
> 


Ticket Details
===================
Ticket ID: XPO-276613
Department: Support netCDF
Priority: High
Status: Open