[netCDF #XPO-276613]: compiling f90 and including netcdf

Greetings Francis,

I looked through your logs and everything looks ok. You could always do a `make 
clean` and start from the beginning, but this time set the 
--prefix=/where/ever/you/want when running netcdf config to install the libs in 
a different directory. Just be sure to update

 NETCDF = -L/usr/local/lib -lnetcdff -lnetcdf -L/sw/lib -lcurl

to point to the custom install directory rather than /usr/local/lib.

Let me know how it goes,

Sean


> Hello Sean,
> 
> I am a bit hesitate to make install the netcdf for fear that it won't work 
> serially anymore.  I thought I could compile some netcdf code using these 
> libraries but 1) I'm not sure where they are and 2) because I'm using fftw3 
> that is in /usr/local/lib, there's the old netcdf that is also there and I'm 
> not sure how to tell it to use one or the other.
> 
> Any advice?
> 
> Francis
> 
> On 2011-07-27, at 2:41 PM, Unidata netCDF Support wrote:
> 
> > Francis,
> >
> > Try re-running config, but add lt_cv_ld_force_load=no like this:
> >
> > lt_cv_ld_force_load=no ./configure <whatever options you added>
> >
> > To log make and make check, do the following:
> >
> > make >& make.out&
> >
> > Then, to watch things progress, you can do:
> >
> > tail -f make.out
> >
> > You can do the exact same thing for make check (just be sure to rename 
> > make.out to make_check.out or something like that).
> >
> > Make sure to do a `make clean` before trying the above steps.
> >
> > Cheers!
> >
> > Sean
> >
> >
> >> Hello Sean,
> >>
> >> Here is a copy of my config.log.  I don't see where the make and make 
> >> check were stored.  If you tell me I'll send them.  Otherwise, I'll redo 
> >> the make and make check and send you the output.
> >>
> >> Thanks,
> >> Francis
> >>
> >>
> >>
> >>
> >>
> >> On 2011-07-27, at 1:15 PM, Unidata netCDF Support wrote:
> >>
> >>> Francis,
> >>>
> >>> Would you mind sending me the configure, make, and make check logs from 
> >>> your desktop build?
> >>>
> >>> Thanks!
> >>>
> >>> Sean
> >>>
> >>>> Hello Sean,
> >>>>
> >>>> Thanks for the advice.  I'm testing this out on a MacPro and  MacBook 
> >>>> Pro.
> >>>>
> >>>> On my laptop it compiles fine, thanks!   The nc-config didn't say that 
> >>>> but now I know better.
> >>>>
> >>>> On my desktop it no longer complains about not finding netcdf.mod 
> >>>> (that's progress) but now it doesn't find netcdff.  When I look in 
> >>>> usr/local/lib I see netcdf and netcdf_c++ but no netcdff.  Maybe I 
> >>>> needed to do something to include it when I built netcdf 4.1.1?
> >>>>
> >>>> Cheers,
> >>>> Francis
> >>>>
> >>>> On 2011-07-27, at 11:48 AM, Unidata netCDF Support wrote:
> >>>>
> >>>>> Greetings Francis!
> >>>>>
> >>>>> You seem to be missing the netcdf fortran library (-lnetcdff) in your 
> >>>>> NETCDF variable. It should be something like:
> >>>>>
> >>>>> NETCDF = -L/usr/local/lib -lnetcdff -lnetcdf -L/sw/lib -lcurl
> >>>>>
> >>>>> If you need to see what lib flags you should use, check out the program 
> >>>>> nc-config:
> >>>>>
> >>>>> nc-config --flibs
> >>>>>
> >>>>> There are all kinds of goodies that can be found using 
> >>>>> nc-config...check out
> >>>>>
> >>>>> nc-config --help
> >>>>>
> >>>>> for more info.
> >>>>>
> >>>>> Please let me know if adding -lnetcdff works for you.
> >>>>>
> >>>>> Cheers!
> >>>>>
> >>>>> Sean
> >>>>>
> >>>>>> Hello,
> >>>>>>
> >>>>>> Since my first email I've made some progress, but I'm still having 
> >>>>>> some difficulty.
> >>>>>>
> >>>>>> Since last I wrote I have figured out that netcdf does seem to be 
> >>>>>> installed correctly because I can run some f90 programs that call 
> >>>>>> netcdf.  At least in serial.
> >>>>>>
> >>>>>> For my serial problem my makefile looks like
> >>>>>>
> >>>>>> FC      = /sw/bin/gfortran
> >>>>>> FFLAGS  = -g -O2 -I/usr/local/include
> >>>>>> MATH    = -lm
> >>>>>> NETCDF  = -L/usr/local/lib -lnetcdf -L/sw/lib -lcurl
> >>>>>> FFT     = -L/usr/local/lib -lfftw3
> >>>>>>
> >>>>>> all:rsw
> >>>>>>
> >>>>>> %.o: %.f90
> >>>>>> $(FC) $(FFLAGS) -c $<
> >>>>>>
> >>>>>> rsw: $(OBJ)
> >>>>>> $(FC) $(FFLAGS) -o rsw_nl.out $(OBJ) $(MATH) $(FFT) $(NETCDF)
> >>>>>>
> >>>>>>
> >>>>>> My MPI version is very similar and looks like this,
> >>>>>>
> >>>>>> FC      = /usr/local/bin/mpif90
> >>>>>> FFLAGS  = -g -O2 -I/usr/local/include
> >>>>>> MATH    = -lm
> >>>>>> NETCDF  = -L/usr/local/lib -lnetcdf -L/sw/lib -lcurl
> >>>>>> FFT     = -L/usr/local/lib -lfftw3
> >>>>>> MPI     = -L/usr/local/lib -lmpi
> >>>>>>
> >>>>>> all:rsw
> >>>>>>
> >>>>>> %.o: %.f90
> >>>>>> $(FC) $(FFLAGS) $(NETCDF) -c $<
> >>>>>>
> >>>>>> rsw: $(OBJ)
> >>>>>> $(FC) $(FFLAGS) -o rsw_nl.out $(OBJ) $(MATH) $(FFT) $(MPI) $(NETCDF)
> >>>>>>
> >>>>>>
> >>>>>> Unfortunately in this case it cannot find netcdf.mod
> >>>>>>
> >>>>>> /usr/local/bin/mpif90 -g -O2 -I/usr/local/include -L/usr/local/lib 
> >>>>>> -lnetcdf -L/sw/lib -lcurl -c save_fields.f90
> >>>>>> save_fields.f90:6.12:
> >>>>>>
> >>>>>> USE netcdf
> >>>>>> 1
> >>>>>> Fatal Error: Wrong module version '0' (expected '6') for file 
> >>>>>> 'netcdf.mod' opened at (1)
> >>>>>> make: *** [save_fields.o] Error 1
> >>>>>>
> >>>>>> even though there is a local copy of it in the directory,
> >>>>>>
> >>>>>> Do you have any ideas why I can use netcdf in serial but not in 
> >>>>>> parallel? I've tried restructuring my makefile but to no avail.
> >>>>>>
> >>>>>> Thanks,
> >>>>>> Francis
> >>>>>>
> >>>>>>
> >>>>>> On 2011-07-20, at 10:54 AM, Unidata netCDF Support wrote:
> >>>>>>
> >>>>>>>
> >>>>>>> Francis Poulin,
> >>>>>>>
> >>>>>>> Your Ticket has been received, and a Unidata staff member will review 
> >>>>>>> it and reply accordingly. Listed below are details of this new 
> >>>>>>> Ticket. Please make sure the Ticket ID remains in the Subject: line 
> >>>>>>> on all correspondence related to this Ticket.
> >>>>>>>
> >>>>>>> Ticket ID: XPO-276613
> >>>>>>> Subject: compiling f90 and including netcdf
> >>>>>>> Department: Support netCDF
> >>>>>>> Priority: Normal
> >>>>>>> Status: Open
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>> The NetCDF libraries are developed at the Unidata Program Center/UCAR,
> >>>>>>> in Boulder, Colorado; we are funded primarily by the U.S. National
> >>>>>>> Science Foundation.
> >>>>>>>
> >>>>>>> All support requests are handled by the development team; no
> >>>>>>> dedicated support staff are funded at this time. For this reason
> >>>>>>> we cannot guarantee response times, nor can we resolve every support
> >>>>>>> issue, although we do our best to respond within 72 hours.
> >>>>>>>
> >>>>>>> It is in the nature of support requests that the same question is
> >>>>>>> asked many times. We urge you to search the support archives for
> >>>>>>> material relating to your support inquiry:
> >>>>>>>
> >>>>>>> http://www.unidata.ucar.edu/search.jsp?support&netcdf
> >>>>>>>
> >>>>>>> If you are having trouble building netCDF, please take a look at the
> >>>>>>> "Build Troubleshooter" section of the netCDF home page:
> >>>>>>>
> >>>>>>> http://www.unidata.ucar.edu/software/netcdf/
> >>>>>>>
> >>>>>>> Windows users should see the FAQ list:
> >>>>>>>
> >>>>>>> http://www.unidata.ucar.edu/software/netcdf/docs/faq.html#windows_netcdf4
> >>>>>>>
> >>>>>>> Complete documentation (including a tutorial, and sample programs in
> >>>>>>> C, Fortran, Java, and other programming languages) can be found on the
> >>>>>>> netCDF Documentation page:
> >>>>>>>
> >>>>>>> http://www.unidata.ucar.edu/software/netcdf/docs/
> >>>>>>>
> >>>>>>> If you resolve your issue through one of these methods, please send a
> >>>>>>> reply to this email letting us know that you no longer require
> >>>>>>> assistance. This will help us spend more time on netCDF development.
> >>>>>>>
> >>>>>>> Best regards,
> >>>>>>>
> >>>>>>> Unidata User Support
> >>>>>>
> >>>>>>
> >>>>>
> >>>>>
> >>>>> Ticket Details
> >>>>> ===================
> >>>>> Ticket ID: XPO-276613
> >>>>> Department: Support netCDF
> >>>>> Priority: High
> >>>>> Status: Open
> >>>>
> >>>>
> >>>
> >>>
> >>> Ticket Details
> >>> ===================
> >>> Ticket ID: XPO-276613
> >>> Department: Support netCDF
> >>> Priority: High
> >>> Status: Open
> >>
> >>
> >>
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: XPO-276613
> > Department: Support netCDF
> > Priority: High
> > Status: Open
> 
> 


Ticket Details
===================
Ticket ID: XPO-276613
Department: Support netCDF
Priority: High
Status: Open