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Mark, Looks good. Contact me if you have any other questions. Regards, Steve Emmerson ------- Original Message Date: Wed, 16 Nov 2005 14:06:36 -0700 From: Mark Seefeldt <address@hidden>To: Steve Emmerson <ste address@hidden> Subject: Re: 20051114: netcdf-perl-1.2.3 This is a multi-part message in MIME format. --------------000706030402070804080106 Content-Type: text/plain; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: 7bit Steve, Hey! I think that did it. I have attached the log files if you want to verify. I see no problems in the log files. Thank you for all of your help. Mark Steve Emmerson wrote: > Mark, > > Please try this: > > 1. Go to the top-level source-directory. > > 2. Set the environment variable LD_MATH to "-lm" (without the > quotes). (I think LIBS might have been a red herring.) > > 3. Execute the commands "make distclean", "./configure", "make", etc. > > Regards, > Steve Emmerson > > --------------000706030402070804080106 Content-Type: text/x-log; name="configure.log" Content-Transfer-Encoding: 7bit Content-Disposition: inline; filename="configure.log" checking for manual-page index command... checking for C compiler... gcc checking type of operating system... linux checking for dependency generation mechanism... gcc -M checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking the C preprocessor... works checking for C const... yes checking for C volatile... yes checking for C signed... yes checking for C function prototypes... yes checking for standard C variadic functions... yes checking for standard C string generation... yes checking for standard C token pasting... yes checking C void pointer... yes checking for ar... ar checking for tar flags... -chof checking for ranlib... ranlib checking binary distribution directory... /home/ftp/pub/binary/dummy_system checking the installation prefix... /usr/local/udunits-1.12.4 checking the installation exec-prefix... /usr/local/udunits-1.12.4 checking for neqn... neqn checking for tbl... tbl checking for ar... 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(cached) yes checking C header file <search.h> for function twalk()... declared checking for perl... perl checking for type of perl executable to create... dynamic checking for position-independent compilation flags... '' configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/udunits.inc config.status: creating udunits/Makefile config.status: creating perl/Makefile.PL config.status: creating port/master.mk config.status: creating port/Makefile config.status: creating port/misc/Makefile config.status: creating port/cfortran/Makefile config.status: creating port/misc/udposix.h config.status: executing default commands expanding `include's in file `Makefile' expanding `include's in file `lib/Makefile' expanding `include's in file `lib/udunits.inc' expanding `include's in file `udunits/Makefile' expanding `include's in file `perl/Makefile.PL' expanding `include's in file `port/master.mk' expanding `include's in file `port/Makefile' expanding `include's in file `port/misc/Makefile' expanding `include's in file `port/cfortran/Makefile' --------------000706030402070804080106 Content-Type: text/plain; name="CUSTOMIZE" Content-Transfer-Encoding: 7bit Content-Disposition: inline; filename="CUSTOMIZE" # This file is for customizing the configuation process performed by # `./configure'. This file consists of sh(1) variable-definition lines. # The value given to those variable by this file will override their default # values. # # You can also customize the configuration process via the environment # variables seen by ./configure. For example: # # In csh(1): # % setenv CC acc # & setenv CFLAGS -g # % ./configure # # In sh(1): # $ CC=acc CFLAGS=-g ./configure # # Variables in this file override the environmental ones. # ############################################################################# # # Type of C compiler (default is `cc'): # CC='gcc' CC=gcc # # C compiler flags (default is `-O'): # CFLAGS=-g CFLAGS=-O2 # # C preprocessor flags (default is `-DNDEBUG'): # CPPFLAGS=-DDEBUG CPPFLAGS=-DpgiFortran # # Installation prefix (default is `../..'): # prefix=/usr/local/unidata # # Ancillary libraries. SunOS 4 user's might need something like the # following in order to resolve strerror() in the perl/ subdirectory. # LIBS='-L/usr/lang/SC3.0.1/lib -lansi' #LIBS=-lm LD_MATH=-lm --------------000706030402070804080106 Content-Type: text/x-log; name="install.log" Content-Transfer-Encoding: 7bit Content-Disposition: inline; filename="install.log" making `install' in directory /usr/local/udunits-1.12.4/src/port make[1]: Entering directory `/usr/local/udunits-1.12.4/src/port' making `install' in directory /usr/local/udunits-1.12.4/src/port/misc make[2]: Entering directory `/usr/local/udunits-1.12.4/src/port/misc' make -w /usr/local/udunits-1.12.4/lib LIBDIR=/usr/local/udunits-1.12.4/lib make[3]: Entering directory `/usr/local/udunits-1.12.4/src/port/misc' mkdir -p /usr/local/udunits-1.12.4/lib chmod u+rwx,g+rws,o=rx /usr/local/udunits-1.12.4/lib make[3]: Leaving directory `/usr/local/udunits-1.12.4/src/port/misc' ar rcuv /usr/local/udunits-1.12.4/lib/libudport.a uddummy.o a - uddummy.o ranlib /usr/local/udunits-1.12.4/lib/libudport.a make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/port/misc' returning to directory /usr/local/udunits-1.12.4/src/port making `install' in directory /usr/local/udunits-1.12.4/src/port/cfortran make[2]: Entering directory `/usr/local/udunits-1.12.4/src/port/cfortran' make[2]: Nothing to be done for `install'. make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/port/cfortran' returning to directory /usr/local/udunits-1.12.4/src/port make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/port' returning to directory /usr/local/udunits-1.12.4/src making `install' in directory /usr/local/udunits-1.12.4/src/lib make[1]: Entering directory `/usr/local/udunits-1.12.4/src/lib' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/lib' ar rcuv libudunits.a utlib.o utparse.o utscan.o udalloc.o case "" in \ '') ;; \ *) ar rucv libudunits.a ;; \ esac ranlib libudunits.a cp libudunits.a /usr/local/udunits-1.12.4/lib/libudunits.a make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/lib' mkdir -p /usr/local/udunits-1.12.4/include chmod u+rwx,g+rws,o=rx /usr/local/udunits-1.12.4/include cp udunits.h /usr/local/udunits-1.12.4/include/udunits.h make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/lib' cp udunits.inc /usr/local/udunits-1.12.4/include/udunits.inc make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/lib' mkdir -p /usr/local/udunits-1.12.4/etc chmod u+rwx,g+rws,o=rx /usr/local/udunits-1.12.4/etc cp udunits.dat /usr/local/udunits-1.12.4/etc/udunits.dat make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/lib' mkdir -p /usr/local/udunits-1.12.4/man/man3 chmod u+rwx,g+rws,o=rx /usr/local/udunits-1.12.4/man/man3 case `uname -s` in \ OSF1*|IRIX*|HP-UX) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunits.3 > /usr/local/udunits-1.12.4/man/man3/udunits.3;; \ *) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunits.3 | tbl | neqn > /usr/local/udunits-1.12.4/man/man3/udunits.3; ; \ esac extension=`echo udunits.3 | sed 's/[^.]*\.//'`; \ subchapter=`echo $extension | sed 's/.//'`; \ case "$subchapter" in \ '') ;; \ *) chapter=`echo $extension | sed 's/\(.\).*/\1/'`; \ if test -d /usr/local/udunits-1.12.4/man/man3$subchapter; then \ : true; \ else \ mkdir /usr/local/udunits-1.12.4/man/man3$subchapter; \ fi; \ rm -f /usr/local/udunits-1.12.4/man/man3$subchapter/udunits.3; \ ln -s ../`basename /usr/local/udunits-1.12.4/man/man3`/udunits.3 \ /usr/local/udunits-1.12.4/man/man3$subchapter/udunits.3; \ ;; \ esac make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/lib' case `uname -s` in \ OSF1*|IRIX*|HP-UX) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunits.3f > /usr/local/udunits-1.12.4/man/man3/udunits.3f;; \ *) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunits.3f | tbl | neqn > /usr/local/udunits-1.12.4/man/man3/udunits.3 f;; \ esac extension=`echo udunits.3f | sed 's/[^.]*\.//'`; \ subchapter=`echo $extension | sed 's/.//'`; \ case "$subchapter" in \ '') ;; \ *) chapter=`echo $extension | sed 's/\(.\).*/\1/'`; \ if test -d /usr/local/udunits-1.12.4/man/man3$subchapter; then \ : true; \ else \ mkdir /usr/local/udunits-1.12.4/man/man3$subchapter; \ fi; \ rm -f /usr/local/udunits-1.12.4/man/man3$subchapter/udunits.3f; \ ln -s ../`basename /usr/local/udunits-1.12.4/man/man3`/udunits.3f \ /usr/local/udunits-1.12.4/man/man3$subchapter/udunits.3f; \ ;; \ esac make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' returning to directory /usr/local/udunits-1.12.4/src making `install' in directory /usr/local/udunits-1.12.4/src/udunits make[1]: Entering directory `/usr/local/udunits-1.12.4/src/udunits' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/udunits' mkdir -p /usr/local/udunits-1.12.4/bin chmod u+rwx,g+rws,o=rx /usr/local/udunits-1.12.4/bin gcc -o udunits -O2 udunits.o -L/usr/local/udunits-1.12.4/src/lib -ludunits -L/u sr/local/udunits-1.12.4/src/port/misc -ludport -lm cp udunits /usr/local/udunits-1.12.4/bin/udunits make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/udunits' mkdir -p /usr/local/udunits-1.12.4/man/man1 chmod u+rwx,g+rws,o=rx /usr/local/udunits-1.12.4/man/man1 case `uname -s` in \ OSF1*|IRIX*|HP-UX) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunits.1 > /usr/local/udunits-1.12.4/man/man1/udunits.1;; \ *) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunits.1 | tbl | neqn > /usr/local/udunits-1.12.4/man/man1/udunits.1; ; \ esac extension=`echo udunits.1 | sed 's/[^.]*\.//'`; \ subchapter=`echo $extension | sed 's/.//'`; \ case "$subchapter" in \ '') ;; \ *) chapter=`echo $extension | sed 's/\(.\).*/\1/'`; \ if test -d /usr/local/udunits-1.12.4/man/man1$subchapter; then \ : true; \ else \ mkdir /usr/local/udunits-1.12.4/man/man1$subchapter; \ fi; \ rm -f /usr/local/udunits-1.12.4/man/man1$subchapter/udunits.1; \ ln -s ../`basename /usr/local/udunits-1.12.4/man/man1`/udunits.1 \ /usr/local/udunits-1.12.4/man/man1$subchapter/udunits.1; \ ;; \ esac make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits' make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits' returning to directory /usr/local/udunits-1.12.4/src making `install' in directory /usr/local/udunits-1.12.4/src/perl make[1]: Entering directory `/usr/local/udunits-1.12.4/src/perl' Installing /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/auto/UDUNITS/ UDUNITS.so Installing /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/auto/UDUNITS/ UDUNITS.bs Files found in blib/arch: installing files in blib/lib into architecture depend ent library tree Installing /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/UDUNITS.pm Installing /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/auto/UDUNITS/ autosplit.ix Writing /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/auto/UDUNITS/.pa cklist Appending installation info to /usr/lib/perl5/5.8.5/i386-linux-thread-multi/per llocal.pod make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/perl' returning to directory /usr/local/udunits-1.12.4/src make[1]: Entering directory `/usr/local/udunits-1.12.4/src' ln -s perl/udunitsperl.1 . case `uname -s` in \ OSF1*|IRIX*|HP-UX) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunitsperl.1 > /usr/local/udunits-1.12.4/man/man1/udunitsperl.1;; \ *) \ sed \ -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\ udunitsperl.1 | tbl | neqn > /usr/local/udunits-1.12.4/man/man1/udunit sperl.1;; \ esac extension=`echo udunitsperl.1 | sed 's/[^.]*\.//'`; \ subchapter=`echo $extension | sed 's/.//'`; \ case "$subchapter" in \ '') ;; \ *) chapter=`echo $extension | sed 's/\(.\).*/\1/'`; \ if test -d /usr/local/udunits-1.12.4/man/man1$subchapter; then \ : true; \ else \ mkdir /usr/local/udunits-1.12.4/man/man1$subchapter; \ fi; \ rm -f /usr/local/udunits-1.12.4/man/man1$subchapter/udunitsperl.1; \ ln -s ../`basename /usr/local/udunits-1.12.4/man/man1`/udunitsperl.1 \ /usr/local/udunits-1.12.4/man/man1$subchapter/udunitsperl.1; \ ;; \ esac make[1]: Leaving directory `/usr/local/udunits-1.12.4/src' --------------000706030402070804080106 Content-Type: text/x-log; name="make.log" Content-Transfer-Encoding: 7bit Content-Disposition: inline; filename="make.log" making `all' in directory /usr/local/udunits-1.12.4/src/port make[1]: Entering directory `/usr/local/udunits-1.12.4/src/port' making `all' in directory /usr/local/udunits-1.12.4/src/port/misc make[2]: Entering directory `/usr/local/udunits-1.12.4/src/port/misc' gcc -c -O2 -I. -D_REENTRANT -DpgiFortran uddummy.c ar rcuv libudport.a uddummy.o a - uddummy.o case "" in \ '') ;; \ *) ar rucv libudport.a ;; \ esac ranlib libudport.a make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/port/misc' returning to directory /usr/local/udunits-1.12.4/src/port making `all' in directory /usr/local/udunits-1.12.4/src/port/cfortran make[2]: Entering directory `/usr/local/udunits-1.12.4/src/port/cfortran' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/port/cfortran' returning to directory /usr/local/udunits-1.12.4/src/port make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/port' returning to directory /usr/local/udunits-1.12.4/src making `all' in directory /usr/local/udunits-1.12.4/src/lib make[1]: Entering directory `/usr/local/udunits-1.12.4/src/lib' ln -s ../port/misc/udalloc.c . ln -s ../port/misc/udalloc.h . gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu nits-1.12.4/etc/udunits.dat"' -DpgiFortran utlib.c In file included from utlib.c:1127: utlib.c: In function `utInit': utlib.c:1051: warning: passing arg 1 of `ReadUnits' discards qualifiers from po inter target type gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu nits-1.12.4/etc/udunits.dat"' -DpgiFortran utparse.c gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu nits-1.12.4/etc/udunits.dat"' -DpgiFortran utscan.c gcc -c -O2 -I../port/misc -I../port/cfortran -DUT_DEFAULT_PATH='"/usr/local/udu nits-1.12.4/etc/udunits.dat"' -DpgiFortran udalloc.c ar rcuv libudunits.a utlib.o utparse.o utscan.o udalloc.o a - utlib.o a - utparse.o a - utscan.o a - udalloc.o case "" in \ '') ;; \ *) ar rucv libudunits.a ;; \ esac ranlib libudunits.a make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/lib' returning to directory /usr/local/udunits-1.12.4/src making `all' in directory /usr/local/udunits-1.12.4/src/udunits make[1]: Entering directory `/usr/local/udunits-1.12.4/src/udunits' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/udunits' gcc -c -O2 -I../lib -I../port/misc -DpgiFortran udunits.c gcc -o udunits -O2 udunits.o -L/usr/local/udunits-1.12.4/src/lib -ludunits -L/u sr/local/udunits-1.12.4/src/port/misc -ludport -lm make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits' make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits' returning to directory /usr/local/udunits-1.12.4/src cd perl && perl Makefile.PL Checking if your kit is complete... Looks good Warning: -L../lib changed to -L/usr/local/udunits-1.12.4/src/perl/../lib Writing Makefile for UDUNITS making `dynamic' in directory /usr/local/udunits-1.12.4/src/perl make[1]: Entering directory `/usr/local/udunits-1.12.4/src/perl' /usr/bin/perl /usr/lib/perl5/5.8.5/ExtUtils/xsubpp -typemap /usr/lib/perl5/5.8 .5/ExtUtils/typemap -typemap typemap UDUNITS.xs > UDUNITS.xsc && mv UDUNITS.xs c UDUNITS.c Please specify prototyping behavior for UDUNITS.xs (see perlxs manual) gcc -c -I../lib -I../port/misc -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-str ict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS =64 -I/usr/include/gdbm -O2 -g -pipe -m32 -march=i386 -mtune=pentium4 -DVERSI ON=\"1.12.4\" -DXS_VERSION=\"1.12.4\" -fPIC "-I/usr/lib/perl5/5.8.5/i386-linux- thread-multi/CORE" -DpgiFortran UDUNITS.c Running Mkbootstrap for UDUNITS () chmod 644 UDUNITS.bs rm -f blib/arch/auto/UDUNITS/UDUNITS.so gcc -shared -L/usr/local/lib UDUNITS.o -o blib/arch/auto/UDUNITS/UDUNITS.so -L/usr/local/udunits-1.12.4/src/perl/../lib -ludunits -lm chmod 755 blib/arch/auto/UDUNITS/UDUNITS.so cp UDUNITS.bs blib/arch/auto/UDUNITS/UDUNITS.bs chmod 644 blib/arch/auto/UDUNITS/UDUNITS.bs make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/perl' returning to directory /usr/local/udunits-1.12.4/src --------------000706030402070804080106 Content-Type: text/x-log; name="test.log" Content-Transfer-Encoding: 7bit Content-Disposition: inline; filename="test.log" making `test' in directory /usr/local/udunits-1.12.4/src/udunits make[1]: Entering directory `/usr/local/udunits-1.12.4/src/udunits' make[2]: Entering directory `/usr/local/udunits-1.12.4/src/udunits' make[2]: `udunits' is up to date. make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits' ./udunits ../lib/udunits.dat <test.in | sed 's/\.00* UTC/.00 UTC/' \ >test.out Success! make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/udunits' returning to directory /usr/local/udunits-1.12.4/src making `dynamic' in directory /usr/local/udunits-1.12.4/src/perl make[1]: Entering directory `/usr/local/udunits-1.12.4/src/perl' make[1]: Leaving directory `/usr/local/udunits-1.12.4/src/perl' returning to directory /usr/local/udunits-1.12.4/src make[1]: Entering directory `/usr/local/udunits-1.12.4/src' making `test' in directory /usr/local/udunits-1.12.4/src/perl make[2]: Entering directory `/usr/local/udunits-1.12.4/src/perl' cp UDUNITS.pm blib/lib/UDUNITS.pm AutoSplitting blib/lib/UDUNITS.pm (blib/lib/auto/UDUNITS) PERL_DL_NONLAZY=1 /usr/bin/perl "-Iblib/lib" "-Iblib/arch" test.pl Initializing units module......................ok Getting blank unit.............................ok Verifying blank unit...........................ok Scanning ratio units...........................ok Verifying ratio unit...........................ok Converting ratio units.........................ok Scanning temporal unit.........................ok Verifying temporal unit........................ok Printing temporal unit.........................ok Converting value to calendar time..............ok Converting calendar time to value..............ok Scanning interval units........................ok Verifying interval unit........................ok Converting interval units......................ok Verifying clear()..............................ok Verifying shift()..............................ok Verifying scale()..............................ok Verifying multiply()...........................ok Verifying invert().............................ok Verifying divide().............................ok Verifying raise()..............................ok Verifying dup()................................ok Verifying UDUNITS::dup().......................ok Terminating units module.......................ok make[2]: Leaving directory `/usr/local/udunits-1.12.4/src/perl' returning to directory /usr/local/udunits-1.12.4/src make[1]: Leaving directory `/usr/local/udunits-1.12.4/src' --------------000706030402070804080106-- ------- End of Original Message