[netCDF #TRA-562319]: configure can't find hdf5 library

Hello,

Looking at the config.log file you provided, it looks like you need to set the 
CFLAGS and LDFLAGS.

You'll want to set CFLAGS="-I$H5DIR/include" and LDFLAGS="-L$H5DIR/lib".  The 
LD_LIBRARY_PATH is already set to load the library at runtime, but you'll need 
to set these other environmental variables so that the `configure` script can 
properly detect libhdf5 during configure.

Thanks, I hope this helps!

-Ward


> Full Name: Domagoj Podnar
> Email Address: address@hidden
> Organization: Desert Research Institute
> Package Version: 4.9.2
> Operating System: Rocky 8.6
> Hardware: HPE DL360
> Description of problem: configure script can't seem to find hdf5 library even 
> though env. variables are set fine (as seen in the config.log) and library is 
> in the right directory. Details below.
> 
> $ printenv LD_LIBRARY_PATH
> /opt/intel/oneapi/tbb/2021.9.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.9.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.9.0//lib/release:/opt/intel/oneapi/mpi/2021.9.0//lib:/opt/intel/oneapi/itac/2021.9.0/slib:/opt/intel/oneapi/debugger/2023.1.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.1.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.1.0/dep/lib:/opt/intel/oneapi/compiler/2023.1.0/linux/lib:/opt/intel/oneapi/compiler/2023.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2023.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.1.0/linux/compiler/lib/intel64_lin:/opt/hpe/hpc/mpt/mpt-2.28/lib:/smoke1/libs/lib
> $ printenv ZDIR H5DIR
> /smoke1/libs
> /smoke1/libs
> $ ll $H5DIR/lib
> total 22100
> -rw-r--r-- 1 model model 11444052 May 18 09:24 libhdf5.a
> -rw-r--r-- 1 model model   283788 May 18 09:24 libhdf5_hl.a
> -rwxr-xr-x 1 model model     1007 May 18 09:24 libhdf5_hl.la
> lrwxrwxrwx 1 model model       21 May 18 09:24 libhdf5_hl.so -> 
> libhdf5_hl.so.310.0.1
> lrwxrwxrwx 1 model model       21 May 18 09:24 libhdf5_hl.so.310 -> 
> libhdf5_hl.so.310.0.1
> -rwxr-xr-x 1 model model   155608 May 18 09:24 libhdf5_hl.so.310.0.1
> -rwxr-xr-x 1 model model      958 May 18 09:24 libhdf5.la
> -rw-r--r-- 1 model model     3301 May 18 09:24 libhdf5.settings
> lrwxrwxrwx 1 model model       18 May 18 09:24 libhdf5.so -> 
> libhdf5.so.310.1.0
> lrwxrwxrwx 1 model model       18 May 18 09:24 libhdf5.so.310 -> 
> libhdf5.so.310.1.0
> -rwxr-xr-x 1 model model  5198104 May 18 09:24 libhdf5.so.310.1.0
> -rw-r--r-- 1 model model  1914482 May 18 09:34 libjasper.a
> -rwxr-xr-x 1 model model      937 May 18 09:34 libjasper.la
> lrwxrwxrwx 1 model model       18 May 18 09:34 libjasper.so -> 
> libjasper.so.4.0.0
> lrwxrwxrwx 1 model model       18 May 18 09:34 libjasper.so.4 -> 
> libjasper.so.4.0.0
> -rwxr-xr-x 1 model model  1059080 May 18 09:34 libjasper.so.4.0.0
> -rw-r--r-- 1 model model  1520170 May 18 09:28 libpng16.a
> -rwxr-xr-x 1 model model      939 May 18 09:28 libpng16.la
> lrwxrwxrwx 1 model model       19 May 18 09:28 libpng16.so -> 
> libpng16.so.16.39.0
> lrwxrwxrwx 1 model model       19 May 18 09:28 libpng16.so.16 -> 
> libpng16.so.16.39.0
> -rwxr-xr-x 1 model model   694872 May 18 09:28 libpng16.so.16.39.0
> lrwxrwxrwx 1 model model       10 May 18 09:28 libpng.a -> libpng16.a
> lrwxrwxrwx 1 model model       11 May 18 09:28 libpng.la -> libpng16.la
> lrwxrwxrwx 1 model model       11 May 18 09:28 libpng.so -> libpng16.so
> -rw-r--r-- 1 model model   184006 May 18 08:25 libz.a
> lrwxrwxrwx 1 model model       14 May 18 08:25 libz.so -> libz.so.1.2.13
> lrwxrwxrwx 1 model model       14 May 18 08:25 libz.so.1 -> libz.so.1.2.13
> -rwxr-xr-x 1 model model   138376 May 18 08:25 libz.so.1.2.13
> drwxrwxr-x 2 model model       94 May 18 09:34 pkgconfig
> $
> 
> 


Ticket Details
===================
Ticket ID: TRA-562319
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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