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[netCDF #TAV-161604]: Error in make check

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  • Subject: [netCDF #TAV-161604]: Error in make check
  • Date: Mon, 11 Nov 2019 13:16:47 -0700
Hello,

This looks like a small bug on our part; hdf5-1.8.9 does not support dynamic 
filters, and these tests shouldn't run.  I will correct this for the next 
release.  In the meantime, when you run configure, use the option 
`--disable-filter-testing` to correct this problem.

I hope this helps,

-Ward

> Hi there,
> 
> 
> 
> 
> This is Yanhui Liu for Peking University. I am trying to install 
> netcdf-c-4.7.2 and netcdf-fortran-4.5.2.
> 
> The libraries I am using are:
> 
> curl 7.19.7
> 
> zlib 1.2.8
> 
> hdf5 1.8.9
> 
> 
> 
> 
> During make check in compiling netcdf-c-4.7.2, I got error like:
> 
> 
> 
> 
> make[4]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> make[3]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> make[2]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> make[1]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> Making check in plugins
> make[1]: Entering directory `/software/netcdf-c-4.7.2/plugins'
> source='H5Zbzip2.c' object='H5Zbzip2.lo' libtool=yes \
> DEPDIR=.deps depmode=pgcc /bin/sh ../depcomp \
> /bin/sh ../libtool  --tag=CC   --mode=compile pgcc -DHAVE_CONFIG_H -I. -I..  
> -I../include  -I/software/netcdf_1/include   -c -o H5Zbzip2.lo H5Zbzip2.c
> libtool: compile:  pgcc -DHAVE_CONFIG_H -I. -I.. -I../include 
> -I/software/netcdf_1/include -c H5Zbzip2.c -MD  -fpic -DPIC -o 
> .libs/H5Zbzip2.o
> PGC-F-0206-Can't find include file H5PLextern.h (H5Zbzip2.c: 9)
> PGC/x86-64 Linux 19.4-0: compilation aborted
> make[1]: *** [H5Zbzip2.lo] Error 1
> make[1]: Leaving directory `/software/netcdf-c-4.7.2/plugins'
> make: *** [check-recursive] Error 1
> 
> It seems I need a file (H5PLextern.h) in the include diretory. I have been 
> trying to use other configuration to compile the hdf, but the required file 
> is never built.
> 
> 
> 
> 
> I then tried netcdf-4.3.3.1. It could be built, but not the fortran libraries.
> 
> I am wondering whether you have met this error before? Do you happen to know 
> the solution? Could you give me some suggestions please?
> 
> 
> 
> 
> Thank you!
> 
> 
> 
> 
> All the best,
> 
> 
> 
> 
> Yanhui
> 
> 
> 
> 
> 
> 


Ticket Details
===================
Ticket ID: TAV-161604
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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