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[netCDF #TAV-161604]: Error in make check
- Subject: [netCDF #TAV-161604]: Error in make check
- Date: Mon, 11 Nov 2019 13:16:47 -0700
Hello,
This looks like a small bug on our part; hdf5-1.8.9 does not support dynamic
filters, and these tests shouldn't run. I will correct this for the next
release. In the meantime, when you run configure, use the option
`--disable-filter-testing` to correct this problem.
I hope this helps,
-Ward
> Hi there,
>
>
>
>
> This is Yanhui Liu for Peking University. I am trying to install
> netcdf-c-4.7.2 and netcdf-fortran-4.5.2.
>
> The libraries I am using are:
>
> curl 7.19.7
>
> zlib 1.2.8
>
> hdf5 1.8.9
>
>
>
>
> During make check in compiling netcdf-c-4.7.2, I got error like:
>
>
>
>
> make[4]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> make[3]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> make[2]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> make[1]: Leaving directory `/software/netcdf-c-4.7.2/ncdump'
> Making check in plugins
> make[1]: Entering directory `/software/netcdf-c-4.7.2/plugins'
> source='H5Zbzip2.c' object='H5Zbzip2.lo' libtool=yes \
> DEPDIR=.deps depmode=pgcc /bin/sh ../depcomp \
> /bin/sh ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I..
> -I../include -I/software/netcdf_1/include -c -o H5Zbzip2.lo H5Zbzip2.c
> libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I.. -I../include
> -I/software/netcdf_1/include -c H5Zbzip2.c -MD -fpic -DPIC -o
> .libs/H5Zbzip2.o
> PGC-F-0206-Can't find include file H5PLextern.h (H5Zbzip2.c: 9)
> PGC/x86-64 Linux 19.4-0: compilation aborted
> make[1]: *** [H5Zbzip2.lo] Error 1
> make[1]: Leaving directory `/software/netcdf-c-4.7.2/plugins'
> make: *** [check-recursive] Error 1
>
> It seems I need a file (H5PLextern.h) in the include diretory. I have been
> trying to use other configuration to compile the hdf, but the required file
> is never built.
>
>
>
>
> I then tried netcdf-4.3.3.1. It could be built, but not the fortran libraries.
>
> I am wondering whether you have met this error before? Do you happen to know
> the solution? Could you give me some suggestions please?
>
>
>
>
> Thank you!
>
>
>
>
> All the best,
>
>
>
>
> Yanhui
>
>
>
>
>
>
Ticket Details
===================
Ticket ID: TAV-161604
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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