[netCDF #YVN-627825]: libnetcdff.so.5: undefined symbol: ncopts

Is there any possibility that you could upgrade to the latest
netcdf-c library release?

> 
> 
> I optimized the layout of the mail, sorry about the terrible layout before.
> 
> 
> I have compiled netcdf-4.1.3 from source with the OPENMPI compiler 
> (v.3.0.0,which compiled by Intel compiler v15.0.1). Command to compile netcdf:
> 
> 
> CC=mpicc FC=mpif90 F77=mpif77 
> CPPFLAGS+="-I/vol/home/sundifu14/local/packages_parallel/include -DgFortran" 
> LDFLAGS+=-L/vol/home/sundifu14/local/packages_parallel/lib 
> ./configure--prefix=/vol/home/sundifu14/local/packages_parallel 
> --enable-pnetcdf --disable-dap-remote-tests
> 
> 
> The reason why I use -DgFortran is if I don't use it, then I will come across 
> the problem same with 
> https://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg11622.html
> 
> 
> and why I use --disable-dap-remote-tests is if I don't use it, then I will 
> come across the problem mentioned in 
> https://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg12979.html
> 
> 
> and --enable-pnetcdf to enable parallel I/O which I need.
> 
> 
> Then make&make check&make install all goes well.
> 
> 
> then I compiled a program using netcdf library, command is a little complex, 
> but most of the options are not related to my problem, cammand is:
> 
> 
> mpif90 -threads -L${esmf_lib} -L${netcdf_lib} -lnetcdff -lnetcdf -g -o 
> ccpl.exe esmf_coupling_param.o roms_swan.o ${roms}/Build/mct_coupler_params.o 
> ${roms}/Build/ocean_control.o ${roms}/Build/ocean_coupler.o 
> ${roms}/Build/propregator.o ${roms}/Build/roms_export.o 
> ${roms}/Build/roms_import.o coupled.o wrf.o -lesmf -ldl -lnsl -lutil -limf 
> -lsvml -lm -lipgo -ldecimal -liomp5 -lcilkrts -lstdc++ -lgcc_s -lgcc -lirc 
> -lpthread -lgcc_s -lgcc -lirc_s -lrt -w -ftz -align all -fno-alias -fp-model 
> precise -FR -convert big_endian -ip ${wrf}/main/module_wrf_top.o libwrflib.a 
> ${wrf}/external/fftpack/fftpack5/libfftpack.a 
> ${wrf}/external/io_grib1/libio_grib1.a 
> ${wrf}/external/io_grib_share/libio_grib_share.a 
> ${wrf}/external/io_int/libwrfio_int.a -L${wrf}/external/esmf_time_f90 
> -lesmf_time ${wrf}/external/RSL_LITE/librsl_lit.a 
> ${wrf}/frame/module_internal_header_util.o ${wrf}/frame/pack_utils.o 
> kinds_mod.o constants.o iounits.o netcdf.o grids.o timers.o remap_vars.o 
> remap_read.o remap.o -L
 ${wrf}/external/io_netcdf -lwrfio_nf -L${wrf}/external/io_pnetcdf -g -check 
uninit -ftrapuv -traceback -Vaxlib libNLM.a libMODS.a libNLM_bio.a libANA.a 
${libSWAN} -L${mct}/lib -lmct -lmpeu
> 
> 
> the compiling goes correctly but when I run it, my program breaks with the 
> following error:
> ./ccpl.exe: symbol lookup 
> error:/vol/home/sundifu14/local/packages_parallel/lib/libnetcdff.so.5:  
> undefined symbol: ncopts
> 
> 
> I checked the library libnetcdff.so and the symbol "ncopts" is undefined  (I 
> also checked another account which can run it correctly on our cluster, 
> "ncopts" in libnetcdff.so is also undefined, but didn't report this error).
> 
> 
> I have tried to rebuild the netcdf libraries -- still cannot run.
> 
> 
> Is there any workaround?
> 
> 
> Thank you in advance.
> 
> 
> ----------------
> 
> 
> Steve

=Dennis Heimbigner
  Unidata


Ticket Details
===================
Ticket ID: YVN-627825
Department: Support netCDF
Priority: Normal
Status: Open
===================
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