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Can you at least tell me the size (in characters) of the header (using h5dump or ncdump or NCdumpW)? A very large header can be partly responsible for performance issues. The header is read once per file open. Your report would seem consistent with the cost of reading the header in Java. We rarely encounter really large headers so we have not optimized for that case. I suspect, however, that your original thought was correct. Our Java-native HDF5 implementation is probably the problem. I have put it on our list of issues to look at (see https://github.com/Unidata/thredds/issues/847) but it may take a while. =Dennis Heimbigner Unidata Ticket Details =================== Ticket ID: CRA-892492 Department: Support netCDF Java Priority: Normal Status: Closed =================== NOTE: All email exchanges with Unidata User Support are recorded in the Unidata inquiry tracking system and then made publicly available through the web. If you do not want to have your interactions made available in this way, you must let us know in each email you send to us.