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[netCDF #GRH-752121]: problems installing netcdf-fortran

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  • Subject: [netCDF #GRH-752121]: problems installing netcdf-fortran
  • Date: Wed, 09 Nov 2016 16:50:30 -0700
Hello,

We will certainly try to get this working for you; can you provide the output 
if you run nf_test by itself? This will provide some indicator of what is 
occurring.  From that, we can hopefully diagnose the issue.

Thanks! 

-Ward

> Dear Support team,
> 
> I really hope you can solve my problem:
> 
> 
> I need to install parallel version of netcdf. I have :
> 
> 1) installed hdf5 (1.8.13) with static and parallel configuration
> 
> 2) installed netcdf-C (4.3.3.1) all went well as you can see from nc-config 
> -all
> 
> --cc        -> /usr/lib64/openmpi/bin/mpicc
> --cflags    ->  -I/home/andore/local/include -I/home/andore/local/include 
> -I/home/andore/local/zlib/include
> --libs      -> -L/home/andore/local/lib -L/home/andore/local/lib 
> -L/home/andore/local/zlib/lib -lnetcdf -lhdf5_hl -lhdf5 -ldl -lm -lz -lcurl
> 
> --has-c++   -> no
> --cxx       ->
> --has-c++4  -> no
> --cxx4      ->
> 
> --fc        -> gfortran
> --fflags    -> -I/usr/include
> --flibs     -> -lnetcdff
> --has-f90   -> yes
> 
> --has-dap   -> yes
> --has-nc2   -> yes
> --has-nc4   -> yes
> --has-hdf5  -> yes
> --has-hdf4  -> no
> --has-pnetcdf-> no
> 
> --prefix    -> /home/andore/local
> --includedir-> /home/andore/local/include
> --version   -> netCDF 4.3.3.1
> 
> 
> 3) when try to install netcdf-fortran (4.4.3) it fails during make check on 
> test of nf_test. Attached the config.log and below the commands that I'm 
> using to install it.
> 
> 
> export ZLIB=/home/andore/local/zlib
> 
> export H5DIR=/home/andore/local
> 
> export NCDIR=/home/andore/local
> 
> 
> CC=/usr/lib64/openmpi/bin/mpicc \
> FC=/usr/lib64/openmpi/bin/mpif90 \
> F77=/usr/lib64/openmpi/bin/mpif77 \
> CPPFLAGS="-I${NCDIR}/include -I${ZLIB}/include" \
> LDFLAGS="-L${HDF5}/lib -L${ZLIB}/lib" \
> LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:${HDF5}/lib:${ZLIB}/lib \
> LIBS="-lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl" \
> CFLAGS=-DgFortran \
> ./configure --disable-shared --prefix=${HDF5} --enable-parallel-tests
> 
> make check
> make install
> 
> -----------------------------------------------------------------------------------------------
> 
> 
> 
> Thanks in advance
> 
> Best wishes,
> 
> Barbara
> 
> 
> 
> 


Ticket Details
===================
Ticket ID: GRH-752121
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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