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[netCDF #VOZ-441159]: Error installing netcdf

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  • Subject: [netCDF #VOZ-441159]: Error installing netcdf
  • Date: Wed, 20 Apr 2016 13:26:08 -0600
Hello Robert,

This is a known issue.  Currently, we are not officially supporting HDF5 
1.10.0, but support will be available in the upcoming 4.4.1 release.  The main 
issue is that HDF5 1.10.0, combined with netcdf-c 4.4.0 or earlier, creates 
binary files that are not readable on systems that are using hdf5 1.8.16 or 
earlier.   There is a release candidate for 4.4.1, available from our GitHub 
page, at https://github.com/Unidata/netcdf-c/releases.  There are still test 
failures, but these can be ignored for the time being.

I hope this helps!

-Ward

> I am sorry.  I should have included that the OS is CentOS 7 with all updates.
> 
> From: Robert Diersing
> Sent: Wednesday, April 20, 2016 12:44 PM
> To: 'address@hidden'
> Subject: Error installing netcdf
> 
> Dear Sir/Madam:
> 
> Here is my error from the log file:
> 
> ==========================================
> netCDF 4.4.0: h5_test/test-suite.log
> ==========================================
> 
> # TOTAL: 26
> # PASS:  25
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  1
> # XPASS: 0
> # ERROR: 0
> 
> .. contents:: :depth: 2
> 
> FAIL: tst_h_dimscales
> =====================
> 
> HDF5-DIAG: Error detected in HDF5 (1.10.0) thread 0:
> #000: H5Gdeprec.c line 1092 in H5Gget_objtype_by_idx(): can't get object type
> major: Symbol table
> minor: Inappropriate type
> #001: H5Gdeprec.c line 1144 in H5G_obj_get_type_by_idx(): can't locate type
> major: Symbol table
> minor: Object not found
> #002: H5Gstab.c line 1219 in H5G__stab_get_type_by_idx(): index out of bound
> major: Invalid arguments to routine
> minor: Inappropriate type
> 
> *** Checking HDF5 dimension scales.
> *** Creating simple dimension scales file...ok.
> *** Checking that simple dimscale file can be read...ok.
> *** Creating simple dimension scales file with lots of datasets...ok.
> *** Creating a file with an unlimited dimension scale...ok.
> *** Checking that unlimited dimscale file can be read...ok.
> *** Creating some 3D datasets using shared dimscales...ok.
> *** Checking 3D datasets created with shared dimscales...Sorry! Unexpected 
> result, tst_h_dimscales.c, line: 579
> FAIL tst_h_dimscales (exit status: 2)
> 
> Any suggestions you have will be appreciated.  Thank you.
> 
> Robert J. Diersing, Ph.D.
> Professor Emeritus of Computer Science
> HPCC System Administrator
> Executive Director of Special Projects
> Dean's Office
> Frank H. Dotterweich College of Engineering
> EC 271
> 361.593.3964
> 
> 
> 


Ticket Details
===================
Ticket ID: VOZ-441159
Department: Support netCDF
Priority: Normal
Status: Closed