Hi, Thanks for confirming the presence of libdl; that helps dial things in. Looking at the file you attached, it still looks like it might be the `configure` script? When configure is run, it generates a file `config.log` (note that it's config, not configure). You shouldn't need to capture any output or anything. The main thing `config.log` gives us is that it's very readable, particularly compared to the `configure` script, and contains more information than the output sent by the configure script to standard output. I've attached a sample config.log file so you can see what I'm talking about. If you can locate and send off the config.log from your build attempt, I will take a look and see if I can sort this out! Have a great day, -Ward address@hidden> wrote: > New Client Reply: H5Fflush not found > > Thanks for the very fast turn around! > > I attach the correct version of configure.log - or at least - one that > finishes with a non-zero exit... > > I would be kind of surprised if libdl wasn't present. Indeed - on /lib > I find: > > -rwxr-xr-x 1 root root 20668 May 30 2013 libdl-2.5.so > lrwxrwxrwx 1 root root 12 Dec 29 2012 libdl.so.2 -> libdl-2.5.so > > -jrm > > > On 04/11/2016 03:35 PM, Unidata netCDF Support wrote: > > Hello James, > > > > Thanks for providing all of the information; as you've deduced, the HDF5 > library 1.8.8 is too old to use with modern netCDF. 1.8.9 is the minimum > version required, and 1.8.16 should work just fine. It appears that you do > not have `libdl` installed on your system. If this is the case, you can > either install it, or, if hdf5 was built without dynamic-loading support, > you should be able to pass `--disable-dynamic-loading` (instead of using > LIBS=-ldl). If libdl is present, `configure` should find it itself, and > you wouldn't need to force inclusion via `LIBS`. > > > > It looks like the file you attached, ` Config_4.3.3.1.log`, is actually > the `configure` script and not the generated `config.log` file generated > when you ran configure. If you provide the config.log file I can look at > it to confirm my suspicions, or you can try my suggestions and let me know > if they work, fail, or if the symptoms change. > > > > I hope this helps, > > > > -Ward > > > >> I'm trying to build a newer version of NETCDF and am encountering the > >> H5Fflush failure on configure. Specifically: > >> > >> checking for library containing H5Fflush... no > >> > >> I'm trying to work forward from an older NETCDF build that worked, to > >> something newer. > >> > >> * Our last working build of NETCDF was 4.2.1.1, using HDF5 1.8.8. I > >> was able to reproduce this. > >> * I obtained the HDF 1.8.16, and was also able to use that to repeat > >> the 4.2.1.1 build > >> * Substituting in the NETCDF 4.3.3.1 archive in the procedure that > >> built 4.2.1.1 yields the configure failure > >> * I observed the remarks about the need for "LIBS=-ldl" in [netCDF > >> #AWC-509858], so added that env setting to my build > >> * Reproduced the 4.2.1.1/HDF 1.8.16 build with the "LIBS=-ldl" setting > >> * NETCDF 4.3.3.1 build modified with "LIBS=-ldl" still yields the > >> configure failure > >> > >> > >> I am attaching four files as follows: > >> > >> 1. Build_4.2.1.1.log - stdout/err for configure and build of NETCDF > >> 4.2.1.1 w/HDF5 1.8.16 (successful) > >> 2. Config_4.2.1.1.log - configure.log associated with the build of > 4.2.1.1 > >> 3. Build_4.3.3.1.log - stdout/err for configure of NETCDF 4.3.3.1 > >> w/HDF5 1.8.16 (failed) > >> 4. Config_4.3.3.1.log - configure.log associated with attempted build > >> 4.3.3.1 > >> > >> > >> Assistance of a prompt nature would be greatly appreciated.... > >> > >> -jrm > >> > >> James Mason > >> Exa Corp > >> Burlington, MA > >> > >> > >> > > Ticket Details > > =================== > > Ticket ID: AWC-509858 > > Department: Support netCDF > > Priority: Normal > > Status: Closed > > > > > Ticket Details > =================== > Ticket ID: AWC-509858 > Department: Support netCDF > Priority: Normal > Status: Open > Link: > https://andy.unidata.ucar.edu/esupport/staff/index.php?_m=tickets&_a=viewticket&ticketid=22078 > Ticket Details =================== Ticket ID: AWC-509858 Department: Support netCDF Priority: Normal Status: Open
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