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[netCDF #AFE-283250]: Hlep needed for installing NetCDF

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  • Subject: [netCDF #AFE-283250]: Hlep needed for installing NetCDF
  • Date: Wed, 10 Feb 2016 10:59:14 -0700
Hello,

This is an odd error.  It is indicating that the libhdf5 library does not have 
the `H5P_CLS_FILE_ACCESS_ID_g` function.  Can you provide more information 
regarding how you compiled hdf5?  Did you enable the high-level libraries via 
`--enable-hl`? Did you build hdf5 statically or as a shared library? This issue 
might also arise if there were two copies of libhdf5 on the system; can you 
check `/usr/lib/` and see if there are any libhdf5 libraries present?  It might 
be the case that, when the tests run, they are picking up an older, different 
libhdf5 library.

Thanks for any additional information you can provide!

-Ward

> Hello,
> 
> I am trying to install NetCDF 4-4.0 on my computer and I have installed zlib 
> and hdf5 on /usr/local/lib.
> 
> I used these comments for installation:
> 
> $NCDIR=/usr/local
> $ CPPFLAGS=-I${H5DIR}/include LDFLAGS=-L${H5DIR}/lib ./configure 
> --prefix=${NCDIR}
> $ make check
> $ make install
> 
> 
> 
> However, while installing NetCDF I got this error:
> 
> 
> tst_h_files.o: In function `main':
> 
> /home/civil/Downloads/netcdf-4.4.0/h5_test/tst_h_files.c:49: undefined 
> reference to `H5P_CLS_FILE_ACCESS_ID_g'
> /home/civil/Downloads/netcdf-4.4.0/h5_test/tst_h_files.c:75: undefined 
> reference to `H5P_CLS_FILE_ACCESS_ID_g'
> /home/civil/Downloads/netcdf-4.4.0/h5_test/tst_h_files.c:100: undefined 
> reference to `H5P_CLS_FILE_ACCESS_ID_g'
> /home/civil/Downloads/netcdf-4.4.0/h5_test/tst_h_files.c:115: undefined 
> reference to `H5P_CLS_FILE_ACCESS_ID_g'
> collect2: error: ld returned 1 exit status
> make[2]: *** [tst_h_files] Error 1
> make[2]: Leaving directory `/home/civil/Downloads/netcdf-4.4.0/h5_test'
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory `/home/civil/Downloads/netcdf-4.4.0/h5_test'
> make: *** [check-recursive] Error 1
> 
> 
> 
> I attached the "configure.lib" file.
> 
> I really appreciate your help.
> 
> Best regards,
> 
> 
> ________________________________
> Mohammad Tayarani
> Ph.D. Student
> Department of Civil Engineering
> University of New Mexico
> 210 University Blvd NE
> Albuquerque, NM 87106
> 
> Tel:1-505-277-2778<tel:1-505-277-2778>
> http://tayarani.people.unm.edu/
> 
> 


Ticket Details
===================
Ticket ID: AFE-283250
Department: Support netCDF
Priority: Normal
Status: Closed