[netCDF #GKB-625169]: problem installing netcdf-fortran

Hello Nina,

This is certainly strange; it does not appear that you are doing anything 
unusual.  Would it be possible to get the `config.log` file generated when you 
run `configure` for both configurations?  That will provide information 
regarding environmental variables and your platform which may help figure out 
what is going on.

Thank you,

-Ward

> Dear support team,
> 
> I am trying to build netcdf-fortran with shared libraries locally on our
> computer system with the following details:
> 
> host-triplet:   x86_64-unknown-linux-gnu
> shell:          /bin/sh
> compiler:       gcc
> compiler flags: -march=x86-64 -mtune=generic -O2 -pipe
> -fstack-protector-strong
> linker:         /usr/bin/ld -m elf_x86_64 (gnu? yes)
> version:        libtool (GNU libtool) 2.4.6
> automake:       automake (GNU automake) 1.15
> autoconf:       autoconf (GNU Autoconf) 2.69
> 
> While the configure command runs perfectly fine, the make check command
> returns the following error message
> 
> Usage: /home/nina/lib/software/netcdf-fortran-4.4.2/libtool [OPTION]...
> [MODE-ARG]...
> Try 'libtool --help' for more information.
> libtool:   error: unrecognised option: '-I../fortran'
> Makefile:1251: recipe for target 'nf_test' failed
> make[2]: *** [nf_test] Error 1
> make[2]: Leaving directory '/home/nina/lib/software/netcdf
> -fortran-4.4.2/nf_test'
> 
> To avoid this I tried to build using static libraries with shared I/O,
> i.e. the command
> CC=mpicc FC=mpif90 F77=mpif77 CPPFLAGS=-I${NCDIR}/include \
> LDFLAGS=-L${NCDIR}/lib ./configure --prefix=${NFDIR}
> 
> However the make check in that case fails at the nf_test (see log-file
> below).
> Do you have any idea what I am doing wrong or can you point me in the
> direction of where to look for my mistake?
> 
> Please let me know if there is any other information you need from my side
> in order to resolve this problem!
> Thank you!
> 
> Best wishes,
> Nina Ridder
> 
> 
> 
> ESA - European Space Agency
> 
> Dr Nina Nadine Ridder
> Research Fellow
> TEC-SF
> 
> ESTEC
> Keplerlaan 1, PO Box 299
> NL-2200 AG Noordwijk, The Netherlands
> address@hidden | www.esa.int
> T +31 71 565 5029 | F +31 71 565 5433
> 
> 
> ==================================================
> netCDF-Fortran 4.4.2: nf_test/test-suite.log
> ==================================================
> 
> # TOTAL: 5
> # PASS:  4
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  1
> # XPASS: 0
> # ERROR: 0
> 
> .. contents:: :depth: 2
> 
> FAIL: nf_test
> =============
> 
> STOP 2
> 
> *** Testing netCDF-3 Fortran 77 API.
> NetCDF version: 4.4.0 of Jan 18 2016 14:57:06 $
> *** testing nf_strerror ...
> *** testing nf_open ...
> *** testing nf_close ...
> *** testing nf_inq ...
> *** testing nf_inq_dimid ...
> *** testing nf_inq_dim ...
> *** testing nf_inq_dimlen ...
> *** testing nf_inq_dimname ...
> *** testing nf_inq_varid ...
> *** testing nf_inq_var ...
> *** testing nf_inq_natts ...
> *** testing nf_inq_ndims ...
> *** testing nf_inq_nvars ...
> *** testing nf_inq_unlimdim ...
> *** testing nf_inq_format ...
> *** testing nf_inq_vardimid ...
> *** testing nf_inq_varname ...
> *** testing nf_inq_varnatts ...
> *** testing nf_inq_varndims ...
> *** testing nf_inq_vartype ...
> *** testing nf_get_var1_text ...
> *** testing nf_get_var1_int1 ...
> *** testing nf_get_var1_int2 ...
> *** testing nf_get_var1_int ...
> *** testing nf_get_var1_real ...
> *** testing nf_get_var1_double ...
> *** testing nf_get_var_text ...
> *** testing nf_get_var_int1 ...
> *** testing nf_get_var_int2 ...
> *** testing nf_get_var_int ...
> *** testing nf_get_var_real ...
> *** testing nf_get_var_double ...
> *** testing nf_get_vara_text ...
> *** testing nf_get_vara_int1 ...
> *** testing nf_get_vara_int2 ...
> *** testing nf_get_vara_int ...
> *** testing nf_get_vara_real ...
> *** testing nf_get_vara_double ...
> *** testing nf_get_vars_text ...
> *** testing nf_get_vars_int1 ...
> *** testing nf_get_vars_int2 ...
> *** testing nf_get_vars_int ...
> *** testing nf_get_vars_real ...
> *** testing nf_get_vars_double ...
> *** testing nf_get_varm_text ...
> *** testing nf_get_varm_int1 ...
> *** testing nf_get_varm_int2 ...
> *** testing nf_get_varm_int ...
> *** testing nf_get_varm_real ...
> *** testing nf_get_varm_double ...
> *** testing nf_get_att_text ...
> *** testing nf_get_att_int1 ...
> *** testing nf_get_att_int2 ...
> *** testing nf_get_att_int ...
> *** testing nf_get_att_real ...
> *** testing nf_get_att_double ...
> *** testing nf_inq_att ...
> *** testing nf_inq_attname ...
> *** testing nf_inq_attid ...
> *** testing nf_inq_attlen ...
> *** testing nf_inq_atttype ...
> *** testing nf_create ...
> *** testing nf_redef ...
> *** testing nf_enddef ...
> *** testing nf_sync ...
> *** testing nf_abort ...
> *** testing nf_def_dim ...
> *** testing nf_rename_dim ...
> *** testing nf_def_var ...
> *** testing nf_put_var1_text ...
> *** testing nf_put_var1_int1 ...
> *** testing nf_put_var1_int2 ...
> *** testing nf_put_var1_int ...
> *** testing nf_put_var1_real ...
> *** testing nf_put_var1_double ...
> *** testing nf_put_var_text ...
> *** testing nf_put_var_int1 ...
> *** testing nf_put_var_int2 ...
> *** testing nf_put_var_int ...
> *** testing nf_put_var_real ...
> *** testing nf_put_var_double ...
> *** testing nf_put_vara_text ...
> *** testing nf_put_vara_int1 ...
> *** testing nf_put_vara_int2 ...
> *** testing nf_put_vara_int ...
> *** testing nf_put_varm_real ...
> *** testing nf_put_varm_double ...
> *** testing nf_rename_var ...
> *** testing nf_put_att_text ...
> *** testing nf_put_att_int1 ...
> *** testing nf_put_att_int2 ...
> *** testing nf_put_att_int ...
> *** testing nf_put_att_real ...
> *** testing nf_put_att_double ...
> *** testing nf_copy_att ...
> *** testing nf_rename_att ...
> *** testing nf_del_att ...
> *** testing nf_set_fill ...
> *** testing nf_set_default_format ...
> bad default format: status = %dNo error
> 
> ###            2  FAILURES TESTING nf_set_default_format! ###
> Total number of failures:            2
> FAIL nf_test (exit status: 2)
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Ticket Details
===================
Ticket ID: GKB-625169
Department: Support netCDF
Priority: Normal
Status: Closed