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Hello Julio, Thanks for providing the test-suite.log file; it provides helpful information. It looks like the problem is the missing file, as you point out. While this is a problem on our end, in the short term you can avoid this by dropping the '--enable-benchmarks' option when you configure netcdf. Give this a try and let me know if it resolves the issue. Thanks, have a great day, -Ward > Dear Support, > > I am installing NetCDF with parallel HDF5 however I got the error while > doing make check: > > > > *FAIL: run_bm_ar4.shFAIL: run_par_bm_test.sh*PASS: run_par_test.sh > ... > ============================================================================ > Testsuite summary for netCDF 4.3.3.1 > ============================================================================ > # TOTAL: 72 > # PASS: 70 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 2 > # XPASS: 0 > # ERROR: 0 > ============================================================================ > See nc_test4/test-suite.log. > Please report to address@hidden > > Attached you will find the test-suite.log and config.log > > > > Looking at the scripts, the next link is empty: > ftp://ftp.unidata.ucar.edu/pub/netcdf/sample_data/ar4/ > > Do you have the sample files in another directory?. > > > I am building in a Supermicro 2 socket Workstation with Xeon E5-2690 v3, > intel compilers. My goal is to get the parallel version of the POM ocean > model running. My building arguments are: > > export CC=mpiicc > export CXX=mpiicpc > export F77=mpiifort > export F90=mpiifort > export FC=mpiifort > > RUNPARALLEL='mpiexec.hydra -n $${NPROCS:=8}' I_MPI_C=ifort I_MPI_F90=ifort > I_MPI_DEBUG=5 HDF5_PARAPREFIX=/apps/Parallel_test FC=mpif90 CXX=mpicxx > CC=mpiicc CXXFLAGS="-fPIC -O2 > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" CFLAGS="-fPIC -O2" > FCFLAGS="-fPIC -O2 > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" FFLAGS="-fPIC -O2 > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" > CPPFLAGS="-I/usr/local/Librerias/zlib-1.2.8/include > -I/usr/local/Librerias/szip-2.1/include > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" > LDFLAGS="-L/usr/local/Librerias/zlib-1.2.8/lib > -L/usr/local/Librerias/szip-2.1/lib > -L/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/lib > -L/usr/local/Librerias/parallel-netcdf/lib" ./configure > --prefix=/usr/local/Librerias/netcdf-4.3.3.1 --enable-parallel-tests > --enable-pnetcdf --enable-large-file-tests --enable-benchmarks > > # NetCDF C Configuration Summary > ============================== > > # General > ------- > NetCDF Version: 4.3.3.1 > Configured On: Tue Jul 14 11:49:15 CDT 2015 > Host System: x86_64-unknown-linux-gnu > Build Directory: /home/wrf/Pruebas/Source/netcdf-4.3.3.1 > Install Prefix: /usr/local/Librerias/netcdf-4.3.3.1 > > # Compiling Options > ----------------- > C Compiler: /opt/intel/impi/5.0.2.044/intel64/bin/mpiicc > CFLAGS: -fPIC -O2 > CPPFLAGS: -I/usr/local/Librerias/zlib-1.2.8/include > -I/usr/local/Librerias/szip-2.1/include > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include > LDFLAGS: -L/usr/local/Librerias/zlib-1.2.8/lib > -L/usr/local/Librerias/szip-2.1/lib > -L/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/lib > -L/usr/local/Librerias/parallel-netcdf/lib > AM_CFLAGS: > AM_CPPFLAGS: > AM_LDFLAGS: > Shared Library: yes > Static Library: yes > Extra libraries: -lpnetcdf -lhdf5_hl -lhdf5 -ldl -lm -lcurl > > # Features > -------- > NetCDF-2 API: yes > NetCDF-4 API: yes > HDF4 Support: no > HDF5 Support: yes > PNetCDF Support: yes > Parallel Support: yes > DAP Support: yes > Diskless Support: yes > MMap Support: no > JNA Support: no > > > Regards. > > Julio Figueroa > ------------------------------------------------- > Julio Figueroa > Oceanólogo / Oceanographer > address@hidden > > > Dear Support, > > I am installing NetCDF with parallel HDF5 however I got the error while > doing make check: > > > > *FAIL: run_bm_ar4.shFAIL: run_par_bm_test.sh*PASS: run_par_test.sh > ... > ============================================================================ > Testsuite summary for netCDF 4.3.3.1 > ============================================================================ > # TOTAL: 72 > # PASS: 70 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 2 > # XPASS: 0 > # ERROR: 0 > ============================================================================ > See nc_test4/test-suite.log. > Please report to address@hidden > > Attached you will find the test-suite.log and config.log > > > > Looking at the scripts, the next link is empty: > ftp://ftp.unidata.ucar.edu/pub/netcdf/sample_data/ar4/ > > Do you have the sample files in another directory?. > > > I am building in a Supermicro 2 socket Workstation with Xeon E5-2690 v3, > intel compilers. My goal is to get the parallel version of the POM ocean > model running. My building arguments are: > > export CC=mpiicc > export CXX=mpiicpc > export F77=mpiifort > export F90=mpiifort > export FC=mpiifort > > RUNPARALLEL='mpiexec.hydra -n $${NPROCS:=8}' I_MPI_C=ifort I_MPI_F90=ifort > I_MPI_DEBUG=5 HDF5_PARAPREFIX=/apps/Parallel_test FC=mpif90 CXX=mpicxx > CC=mpiicc CXXFLAGS="-fPIC -O2 > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" CFLAGS="-fPIC -O2" > FCFLAGS="-fPIC -O2 > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" FFLAGS="-fPIC -O2 > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" > CPPFLAGS="-I/usr/local/Librerias/zlib-1.2.8/include > -I/usr/local/Librerias/szip-2.1/include > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include" > LDFLAGS="-L/usr/local/Librerias/zlib-1.2.8/lib > -L/usr/local/Librerias/szip-2.1/lib > -L/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/lib > -L/usr/local/Librerias/parallel-netcdf/lib" ./configure > --prefix=/usr/local/Librerias/netcdf-4.3.3.1 --enable-parallel-tests > --enable-pnetcdf --enable-large-file-tests --enable-benchmarks > > # NetCDF C Configuration Summary > ============================== > > # General > ------- > NetCDF Version: 4.3.3.1 > Configured On: Tue Jul 14 11:49:15 CDT 2015 > Host System: x86_64-unknown-linux-gnu > Build Directory: /home/wrf/Pruebas/Source/netcdf-4.3.3.1 > Install Prefix: /usr/local/Librerias/netcdf-4.3.3.1 > > # Compiling Options > ----------------- > C Compiler: /opt/intel/impi/5.0.2.044/intel64/bin/mpiicc > CFLAGS: -fPIC -O2 > CPPFLAGS: -I/usr/local/Librerias/zlib-1.2.8/include > -I/usr/local/Librerias/szip-2.1/include > -I/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/include > -I/usr/local/Librerias/parallel-netcdf/include > LDFLAGS: -L/usr/local/Librerias/zlib-1.2.8/lib > -L/usr/local/Librerias/szip-2.1/lib > -L/usr/local/Librerias/hdf5-1.8.15-patch1_paralelo/lib > -L/usr/local/Librerias/parallel-netcdf/lib > AM_CFLAGS: > AM_CPPFLAGS: > AM_LDFLAGS: > Shared Library: yes > Static Library: yes > Extra libraries: -lpnetcdf -lhdf5_hl -lhdf5 -ldl -lm -lcurl > > # Features > -------- > NetCDF-2 API: yes > NetCDF-4 API: yes > HDF4 Support: no > HDF5 Support: yes > PNetCDF Support: yes > Parallel Support: yes > DAP Support: yes > Diskless Support: yes > MMap Support: no > JNA Support: no > > > Regards. > > Julio Figueroa > ------------------------------------------------- > Julio Figueroa > Oceanólogo / Oceanographer > address@hidden > > Ticket Details =================== Ticket ID: BOZ-873400 Department: Support netCDF Priority: Normal Status: Closed