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[netCDF #NRO-363374]: netcdf-fortran parallel instalation fails make check

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  • Subject: [netCDF #NRO-363374]: netcdf-fortran parallel instalation fails make check
  • Date: Fri, 19 Jun 2015 10:30:51 -0600
Hello,

This should be possible.  Can you provide the config.log file created when you 
run configure for netCDF-Fortran?

When you built and installed netCDF-C, I presume that 'make check' reported no 
errors. Is this correct?

Can you try running `f90tst_rengrps` directly? The output should provide 
additional information.  As should `ftst_rengrps` if you run that directly.

Finally, which MPI architecture are you using?  OpenMPI, mpich2, or other?

Thank you,

-Ward

> Hello Support,
> 
> *Goal:*
> I am trying to install the parallel version of HDF5 (1.8.15-patch1),
> NetCDF-C (4.3.3.1), NetCDF-Fortran (4.4.2) y NetCDF-Cxx (4-4.2.1) using GNU
> compilers. However the netcdf-fortran fails in f90tst_rengrps and
> ftst_rengrps while performing make check. Attached
> (netcdf-fortran_make_check-error.log) you will find the compleate output
> from make check. The error message suggest to report to support. Also
> attached you will find the
> 
> libhdf5.settings and libnetcdf.settings files.
> 
> 
> Any help is appreciated to fulfill my goal. Let me know if you want me to
> compile things in different ways o r to try another version of the programs .
> 
> 
> Regards,
> 
> 
> Julio Figueroa.
> 
> 
> 
> *The error message:*
> ============================================================================
> Testsuite summary for netCDF-Fortran 4.4.2
> ============================================================================
> # TOTAL: 31
> # PASS:  29
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  2
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See nf_test/test-suite.log
> Please report to address@hidden
> ============================================================================
> Makefile:1408: recipe for target 'test-suite.log' failed
> make[3]: *** [test-suite.log] Error 1
> make[3]: Leaving directory
> '/home/pronostico/Downloads/netcdf-fortran-4.4.2/nf_test'
> Makefile:1514: recipe for target 'check-TESTS' failed
> make[2]: *** [check-TESTS] Error 2
> make[2]: Leaving directory
> '/home/pronostico/Downloads/netcdf-fortran-4.4.2/nf_test'
> Makefile:1825: recipe for target 'check-am' failed
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory
> '/home/pronostico/Downloads/netcdf-fortran-4.4.2/nf_test'
> Makefile:544: recipe for target 'check-recursive' failed
> make: *** [check-recursive] Error 1
> 
> 
> 
> 
> *The step I took:*
> HDF5:
> CC=mpicc ./configure --enable-parallel --enable-fortran
> --enable-fortran2003 --enable-production --enable-unsupported
> --prefix=/opt/Librerias/hdf5-1.8.15-patch1
> --with-zlib=/opt/Librerias/zlib-1.2.8 --with-szlib=/opt/Librerias/szip-2.1
> --disable-shared
> 
> make
> make check
> make install
> 
> Netcdf-C:
> CPPFLAGS=-I/opt/Librerias/hdf5-1.8.15-patch1/include
> CXXFLAGS=-I/opt/Librerias/hdf5-1.8.15-patch1/include
> FFFLAGS=-I/opt/Librerias/hdf5-1.8.15-patch1/include
> FCFLAGS=-I/opt/Librerias/hdf5-1.8.15-patch1/include
> LDFLAGS=-L/opt/Librerias/hdf5-1.8.15-patch1/lib FC=mpif90 CXX=mpicxx
> CC=mpicc ./configure --prefix=/opt/Librerias/netcdf-4.3.3.1
> 
> make
> make check
> make install
> 
> Netcdf-Fortran (error above):
> CPPFLAGS="-I/opt/Librerias/hdf5-1.8.15-patch1/include
> -I/opt/Librerias/netcdf-4.3.3.1/include"
> CXXFLAGS="-I/opt/Librerias/hdf5-1.8.15-patch1/include
> -I/opt/Librerias/netcdf-4.3.3.1/include"
> FFFLAGS="-I/opt/Librerias/hdf5-1.8.15-patch1/include
> -I/opt/Librerias/netcdf-4.3.3.1/include"
> FCFLAGS="-I/opt/Librerias/hdf5-1.8.15-patch1/include
> -I/opt/Librerias/netcdf-4.3.3.1/include"
> LDFLAGS="-L/opt/Librerias/hdf5-1.8.15-patch1/lib
> -L/opt/Librerias/netcdf-4.3.3.1/lib" FC=mpif90 CXX=mpicxx CC=mpicc
> ./configure --prefix=/opt/Librerias/netcdf-4.3.3.1
> --disable-fortran-type-check --disable-shared
> 
> make OK
> make check, with and without --disable-shared gives errores while testing
> the configuration.
> -------------------------------------------------
> Julio Figueroa
> Oceanólogo / Oceanographer
> address@hidden
> 
> 


Ticket Details
===================
Ticket ID: NRO-363374
Department: Support netCDF
Priority: Normal
Status: Closed