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[netCDF #JNZ-725110]: netcdf install error linux intel

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  • Subject: [netCDF #JNZ-725110]: netcdf install error linux intel
  • Date: Fri, 13 Feb 2015 13:52:26 -0700
Hello Abdoulaye,

Regarding the warning related to `libimf.so`; this is not a library directly 
used or linked against by libnetcdf, so I cannot provide any guidance related 
to it.  A web search suggests it is related to the intel compiler suite, which 
I notice you are using.  

Regarding the test failures, can you provide the file  ncgen3/test-suite.log, 
as well as the file config.log generated when you ran configure?

Thank you,

-Ward



> Dear Sir,
> 
> could someone please help me install netcdf4 on my system.
> 
> This is an urgent issue and hope to have as soon as possible because
> the application I am using requires netcdf.
> 
> /usr/local/lib/libimf.so: warning: warning: feupdateenv is not implemented 
> and will always fail
> depbase=`echo tst_h_dimscales1.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> icc -DHAVE_CONFIG_H -I. -I.. -I../include -DNDEBUG -O3 -xHost -ip 
> -no-prec-div -static-intel -MT tst_h_dimscales1.o -MD -MP -MF $depbase.Tpo -c 
> -o tst_h_dimscales1.o tst_h_dimscales1.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/sh ../libtool --tag=CC --mode=link icc -O3 -xHost -ip -no-prec-div 
> -static-intel -o tst_h_dimscales1 tst_h_dimscales1.o -lhdf5_hl -lhdf5 -ldl 
> -lm -lz
> libtool: link: icc -O3 -xHost -ip -no-prec-div -static-intel -o 
> tst_h_dimscales1 tst_h_dimscales1.o /usr/local/lib/libhdf5_hl.so 
> /usr/local/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/usr/local/lib 
> -Wl,-rpath -Wl,/usr/local/lib
> icc: warning #10237: -lcilkrts linked in dynamically, static library not 
> available
> /usr/local/lib/libimf.so: warning: warning: feupdateenv is not implemented 
> and will always fail
> depbase=`echo tst_h_dimscales2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> icc -DHAVE_CONFIG_H -I. -I.. -I../include -DNDEBUG -O3 -xHost -ip 
> -no-prec-div -static-intel -MT tst_h_dimscales2.o -MD -MP -MF $depbase.Tpo -c 
> -o tst_h_dimscales2.o tst_h_dimscales2.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/sh ../libtool --tag=CC --mode=link icc -O3 -xHost -ip -no-prec-div 
> -static-intel -o tst_h_dimscales2 tst_h_dimscales2.o -lhdf5_hl -lhdf5 -ldl 
> -lm -lz
> libtool: link: icc -O3 -xHost -ip -no-prec-div -static-intel -o 
> tst_h_dimscales2 tst_h_dimscales2.o /usr/local/lib/libhdf5_hl.so 
> /usr/local/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/usr/local/lib 
> -Wl,-rpath -Wl,/usr/local/lib
> icc: warning #10237: -lcilkrts linked in dynamically, static library not 
> available
> /usr/local/lib/libimf.so: warning: warning: feupdateenv is not implemented 
> and will always fail
> depbase=`echo tst_h_dimscales3.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> icc -DHAVE_CONFIG_H -I. -I.. -I../include -DNDEBUG -O3 -xHost -ip 
> -no-prec-div -static-intel -MT tst_h_dimscales3.o -MD -MP -MF $depbase.Tpo -c 
> -o tst_h_dimscales3.o tst_h_dimscales3.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/sh ../libtool --tag=CC --mode=link icc -O3 -xHost -ip -no-prec-div 
> -static-intel -o tst_h_dimscales3 tst_h_dimscales3.o -lhdf5_hl -lhdf5 -ldl 
> -lm -lz
> libtool: link: icc -O3 -xHost -ip -no-prec-div -static-intel -o 
> tst_h_dimscales3 tst_h_dimscales3.o /usr/local/lib/libhdf5_hl.so 
> /usr/local/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/usr/local/lib 
> -Wl,-rpath -Wl,/usr/local/lib
> icc: warning #10237: -lcilkrts linked in dynamically, static library not 
> available
> /usr/local/lib/libimf.so: warning: warning: feupdateenv is not implemented 
> and will always fail
> depbase=`echo tst_h_enums.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> icc -DHAVE_CONFIG_H -I. -I.. -I../include -DNDEBUG -O3 -xHost -ip 
> -no-prec-div -static-intel -MT tst_h_enums.o -MD -MP -MF $depbase.Tpo -c -o 
> tst_h_enums.o tst_h_enums.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/sh ../libtool --tag=CC --mode=link icc -O3 -xHost -ip -no-prec-div 
> -static-intel -o tst_h_enums tst_h_enums.o -lhdf5_hl -lhdf5 -ldl -lm -lz
> libtool: link: icc -O3 -xHost -ip -no-prec-div -static-intel -o tst_h_enums 
> tst_h_enums.o /usr/local/lib/libhdf5_hl.so /usr/local/lib/libhdf5.so -ldl -lm 
> -lz -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib
> icc: warning #10237: -lcilkrts linked in dynamically, static library not 
> available
> /usr/local/lib/libimf.so: warning: warning: feupdateenv is not implemented 
> and will always fail
> depbase=`echo tst_h_dimscales4.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> icc -DHAVE_CONFIG_H -I. -I.. -I../include -DNDEBUG -O3 -xHost -ip 
> -no-prec-div -static-intel -MT tst_h_dimscales4.o -MD -MP -MF $depbase.Tpo -c 
> -o tst_h_dimscales4.o tst_h_dimscales4.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/sh ../libtool --tag=CC --mode=link icc -O3 -xHost -ip -no-prec-div 
> -static-intel -o tst_h_dimscales4 tst_h_dimscales4.o -lhdf5_hl -lhdf5 -ldl 
> -lm -lz
> libtool: link: icc -O3 -xHost -ip -no-prec-div -static-intel -o 
> tst_h_dimscales4 tst_h_dimscales4.o /usr/local/lib/libhdf5_hl.so 
> /usr/local/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/usr/local/lib 
> -Wl,-rpath -Wl,/usr/local/lib
> icc: warning #10237: -lcilkrts linked in dynamically, static library not 
> available
> /usr/local/lib/libimf.so: warning: warning: feupdateenv is not implemented 
> and will always fail
> make[2]: quittant le répertoire « /home/sarr/netcdf-4.3.3/h5_test »
> make check-TESTS
> make[2]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/h5_test »
> make[3]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/h5_test »
> PASS: tst_h_files
> PASS: tst_h_files2
> PASS: tst_h_files4
> PASS: tst_h_atts
> PASS: tst_h_atts3
> PASS: tst_h_atts4
> PASS: tst_h_vars
> PASS: tst_h_vars2
> PASS: tst_h_vars3
> PASS: tst_h_grps
> PASS: tst_h_compounds
> PASS: tst_h_compounds2
> PASS: tst_h_wrt_cmp
> PASS: tst_h_rd_cmp
> PASS: tst_h_vl
> PASS: tst_h_opaques
> PASS: tst_h_strings
> PASS: tst_h_strings1
> PASS: tst_h_strings2
> PASS: tst_h_ints
> PASS: tst_h_dimscales
> PASS: tst_h_dimscales1
> PASS: tst_h_dimscales2
> PASS: tst_h_dimscales3
> PASS: tst_h_enums
> PASS: tst_h_dimscales4
> ============================================================================
> Testsuite summary for netCDF 4.3.3
> ============================================================================
> # TOTAL: 26
> # PASS: 26
> # SKIP: 0
> # XFAIL: 0
> # FAIL: 0
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> make[3]: quittant le répertoire « /home/sarr/netcdf-4.3.3/h5_test »
> make[2]: quittant le répertoire « /home/sarr/netcdf-4.3.3/h5_test »
> make[1]: quittant le répertoire « /home/sarr/netcdf-4.3.3/h5_test »
> Making check in libdispatch
> make[1]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/libdispatch »
> make[1]: Rien à faire pour « check ».
> make[1]: quittant le répertoire « /home/sarr/netcdf-4.3.3/libdispatch »
> Making check in libsrc
> make[1]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/libsrc »
> make[1]: Rien à faire pour « check ».
> make[1]: quittant le répertoire « /home/sarr/netcdf-4.3.3/libsrc »
> Making check in libsrc4
> make[1]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/libsrc4 »
> make[1]: Rien à faire pour « check ».
> make[1]: quittant le répertoire « /home/sarr/netcdf-4.3.3/libsrc4 »
> Making check in liblib
> make[1]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/liblib »
> make[1]: Rien à faire pour « check ».
> make[1]: quittant le répertoire « /home/sarr/netcdf-4.3.3/liblib »
> Making check in ncgen3
> make[1]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/ncgen3 »
> make check-TESTS
> make[2]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/ncgen3 »
> make[3]: entrant dans le répertoire « /home/sarr/netcdf-4.3.3/ncgen3 »
> FAIL: run_tests.sh
> FAIL: run_nc4_tests.sh
> ============================================================================
> Testsuite summary for netCDF 4.3.3
> ============================================================================
> # TOTAL: 2
> # PASS: 0
> # SKIP: 0
> # XFAIL: 0
> # FAIL: 2
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See ncgen3/test-suite.log
> Please report to address@hidden
> ============================================================================
> make[3]: *** [test-suite.log] Erreur 1
> make[3]: quittant le répertoire « /home/sarr/netcdf-4.3.3/ncgen3 »
> make[2]: *** [check-TESTS] Erreur 2
> make[2]: quittant le répertoire « /home/sarr/netcdf-4.3.3/ncgen3 »
> make[1]: *** [check-am] Erreur 2
> make[1]: quittant le répertoire « /home/sarr/netcdf-4.3.3/ncgen3 »
> make: *** [check-recursive] Erreur 1
> 
> Cheers,
> 
> Abdoulaye
> ___________________________________________________________
> Mode, hifi, maison,… J'achète malin. Je compare les prix avec Voila.fr 
> http://shopping.voila.fr/
> 
> 

Ticket Details
===================
Ticket ID: JNZ-725110
Department: Support netCDF
Priority: Normal
Status: Closed