[netCDF #WBE-329560]: Trouble compiling netcdf

Hi Daniel,

Please make sure you were not running "make check" as root, because in
that case the LD_LIBRARY_PATH (or DYLD_LIBRARY_PATH for OSX) would not be
inherited by a subshell, so would not be used to search for installed
libraries.

If that's not the problem, please provide the config.log generated when 
you ran the netCDF-C configure script and also the output from "make check". 

Thanks,
--Russ

> I am trying to compile and install netcdf with hd5 support to be used with
> ESMF but I'm getting the following error log.  The issue seems to be that
> it can't find the libhdf5 shared library but I've linked the libraries in
> (see excerpt from config compiling options).  I've tried installing zlib
> and hd5 to both /usr/local and /home/dan15lw/local and the files are
> there.  I've also tried adding /usr/local/lib to the environment path.
> What am I doing wrong?  I've followed the instructions to a t several times.
> 
> # Compiling Options
> -----------------
> C Compiler: /usr/bin/gcc
> CFLAGS: -g -O2
> CPPFLAGS: -I/home/dan15lw/local/include
> LDFLAGS: -L/home/dan15lw/local/lib
> 
> 
> 
> ==============================================
> netCDF 4.3.3-rc2: h5_test/test-suite.log
> ==============================================
> 
> # TOTAL: 26
> # PASS:  2
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  24
> # XPASS: 0
> # ERROR: 0
> 
> .. contents:: :depth: 2
> 
> FAIL: tst_h_files
> =================
> 
> ./tst_h_files: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_files2
> ==================
> 
> ./tst_h_files2: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_files4
> ==================
> 
> ./tst_h_files4: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_atts
> ================
> 
> ./tst_h_atts: error while loading shared libraries: libhdf5_hl.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_vars
> ================
> 
> ./tst_h_vars: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_vars2
> =================
> 
> ./tst_h_vars2: error while loading shared libraries: libhdf5_hl.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_vars3
> =================
> 
> ./tst_h_vars3: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_grps
> ================
> 
> ./tst_h_grps: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_compounds
> =====================
> 
> ./tst_h_compounds: error while loading shared libraries: libhdf5.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_compounds2
> ======================
> 
> ./tst_h_compounds2: error while loading shared libraries: libhdf5.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_wrt_cmp
> ===================
> 
> ./tst_h_wrt_cmp: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_rd_cmp
> ==================
> 
> ./tst_h_rd_cmp: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_vl
> ==============
> 
> ./tst_h_vl: error while loading shared libraries: libhdf5.so.8: cannot open
> shared object file: No such file or directory
> 
> FAIL: tst_h_opaques
> ===================
> 
> ./tst_h_opaques: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_strings
> ===================
> 
> ./tst_h_strings: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_strings1
> ====================
> 
> ./tst_h_strings1: error while loading shared libraries: libhdf5.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_strings2
> ====================
> 
> ./tst_h_strings2: error while loading shared libraries: libhdf5.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_ints
> ================
> 
> ./tst_h_ints: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_dimscales
> =====================
> 
> ./tst_h_dimscales: error while loading shared libraries: libhdf5_hl.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_dimscales1
> ======================
> 
> ./tst_h_dimscales1: error while loading shared libraries: libhdf5_hl.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_dimscales2
> ======================
> 
> ./tst_h_dimscales2: error while loading shared libraries: libhdf5_hl.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_dimscales3
> ======================
> 
> ./tst_h_dimscales3: error while loading shared libraries: libhdf5_hl.so.8:
> cannot open shared object file: No such file or directory
> 
> FAIL: tst_h_enums
> =================
> 
> ./tst_h_enums: error while loading shared libraries: libhdf5.so.8: cannot
> open shared object file: No such file or directory
> 
> FAIL: tst_h_dimscales4
> ======================
> 
> ./tst_h_dimscales4: error while loading shared libraries: libhdf5_hl.so.8:
> cannot open shared object file: No such file or directory
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: WBE-329560
Department: Support netCDF
Priority: Normal
Status: Closed