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[netCDF #FLE-841916]: Testsuite summary for netCDF 4.3.2

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  • Subject: [netCDF #FLE-841916]: Testsuite summary for netCDF 4.3.2
  • Date: Thu, 11 Sep 2014 21:12:36 -0600
Hi Ben,

> sorry to bombard your with questions.

No problem ...

> have you had a minute to consider my last one?
> I have installed hdf5 into the directory:
> 
> /mnt/data/bweinste/MEGAN/MEGANv2.10/local/hdf5

OK, but are you sure that's HDF5 version 1.8.8 or later, preferably 1.8.13?
You can check by looking in the file 

  /mnt/data/bweinste/MEGAN/MEGANv2.10/local/hdf5/lib/libhdf5.settings

for a line like:

                   HDF5 Version: 1.8.13

which identifies the installed version.  An error message you're getting when
trying to run the netCDF tests seems to indicate an older HDF5 version, 
1.8.4 (patch1), which is too old to pass the stringent tests in netCDF 4.3.2.

> > =========================================
> >
> >  netCDF 4.3.2: ncdump/test-suite.log
> >
> > =========================================
> >
> > # TOTAL: 39
> > # PASS:  37
> > # SKIP:  0
> > # XFAIL: 0
> > # FAIL:  2
> > # XPASS: 0
> > # ERROR: 0
> >
> > .. contents:: :depth: 2
> >
> > FAIL: tst_h_scalar
> >
> > ==================
> >
> > HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 47514256252672:
> > #000: ../../../src/H5T.c line 1595 in H5Tcreate(): unable to create type

To build netCDF, you need to set CPPFLAGS and LDFLAGS to point to your HDF5
installation directories, something like

  H5DIR=/mnt/data/bweinste/MEGAN/MEGANv2.10/local/hdf5
  CPPFLAGS=-I${H5DIR}/include  LDFLAGS=-L${H5DIR}/lib ./configure ...
  make check
  make install # (or sudo make install)

--Russ

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: FLE-841916
Department: Support netCDF
Priority: Normal
Status: Closed