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[netCDF #JHA-515459]: netCDF-4.3.2 test failure on Scientific Linux 6.5

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  • Subject: [netCDF #JHA-515459]: netCDF-4.3.2 test failure on Scientific Linux 6.5
  • Date: Fri, 05 Sep 2014 08:35:31 -0600
Hi Dylan,

> I build netCDF-4.3.2 (with zlib-1.2.8 and hdf5-1.2.12) - as per
> requirements here:
> http://www.unidata.ucar.edu/netcdf/docs/getting_and_building_netcdf.html
> 
> $ CPPFLAGS=-I/usr/local/hdf5/include LDFLAGS=-L/usr/local/hdf5/lib
> ./configure --enable-netcdf4 --prefix=/usr/local/netCDF4
> 
> (..and I built zlib and hdf5 using the following configurations
> respectively):
> 
> $ ./configure --prefix=/usr/local/zlib
> 
> $./configure --enable-fortran --enable-cxx --with-zlib=/usr/local/zlib
> --prefix=/usr/local/hdf5

We don't build or test HDF5 with --enable-fortran or --enable-cxx, as those 
libraries
aren't needed by netCDF-C, but I doubt if that is causing the problem you're 
seeing.

> However I received  an error in the 'make check' stage:
> 
> ===========================================
> netCDF 4.3.2: nc_test4/test-suite.log
> ===========================================
> 
> # TOTAL: 54
> # PASS:  53
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  1
> # XPASS: 0
> # ERROR: 0
> 
> .. contents:: :depth: 2
> 
> FAIL: run_grp_rename.sh
> =======================
> 
> 
> *** Running group_rename test
> /#####/#####/Source/netcdf-4.3.2/nc_test4/.libs/lt-renamegroup: error while
> loading shared libraries: libhdf5_hl.so.8: cannot open shared object file:
> No such file or directory

Does libhdf5_hl exist and is it readable in your /usr/local/hdf5/lib/ directory?
If so, you may need to set your LD_LIBRARY_PATH environment variable to
include /usr/local/hdf5/lib before running "make check".

--Russ

> ***FAIL: attempt to rename /inner/inner_inner failed
> /#####/#####//Source/netcdf-4.3.2/nc_test4/.libs/lt-renamegroup: error
> while loading shared libraries: libhdf5_hl.so.8: cannot open shared object
> file: No such file or directory
> ***FAIL: attempt to rename /inner failed
> 12c12
> < group: renamed {
> ---
> > group: inner {
> 26c26
> <   group: inner_renamed {
> ---
> >   group: inner_inner {
> 29,30c29,30
> <     } // group inner_renamed
> <   } // group renamed
> ---
> >     } // group inner_inner
> >   } // group inner
> ***FAIL: output and reference output differ
> /#####/#####/Source/netcdf-4.3.2/nc_test4/.libs/lt-renamegroup: error while
> loading shared libraries: libhdf5_hl.so.8: cannot open shared object file:
> No such file or directory
> ***XFAIL : attempt to rename root group failed as expected
> 
> 
> O.S Details: Scientific Linux release 6.5 (Carbon), Linux
> 2.6.32-431.20.3.el6.x86_64 x86_64
> 
> Kind Regards,
> 
> Dylan
> 
> Date:    Fri, 05 Sep 2014 15:58:16 +1000
> To:      address@hidden
> From:    Dylan McConnell <address@hidden>
> Subject: Re: netCDF-4.3.2 test failure on Scientific Linux 6.5
> From address@hidden  Thu Sep  4 23: 58:18
> 2014
> 
> Apologies, it was build with hdf5-1.8.12 (not hdf5-1.2.12, as in the
> original email)
> 
> Dylan
> 
> 
> 
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: JHA-515459
Department: Support netCDF
Priority: Normal
Status: Closed