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[netCDF #TDK-633863]: nc_test error when building netCDF 4.3.0 on linux,

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  • Subject: [netCDF #TDK-633863]: nc_test error when building netCDF 4.3.0 on linux,
  • Date: Tue, 15 Oct 2013 15:20:59 -0600
Hi  Jungmin,

Unfortunately, we can't duplicate the problem you are seeing, using the same 
configure
options you used, --disable-dap --disable-netcdf-4.

I notice you are running the test on a GPFS file system.  We saw another 
mysterious
segmentation fault on a GPFS file system a few months ago reported by a user, 
but
we were never able to discover he cause of the problem.

I'm not sure what you're seeing has anything to do with the GPFS file system, 
but do
you see the same problem on any other file system?  Is the problem repeatable?

--Russ

> Package Version: 4.3.0
> Operating System: Linux
> Hardware:
> Description of problem: I am trying to build netCDF 4.3.0 to be used with 
> netCDF fortran on Linux. when I do 'make check' , I encounter an error 
> message as below and cannot continue the install.
> 
> ================================
> 
> make  check-TESTS
> make[2]: Entering directory 
> `/gpfs/scratch3/jungmin/local/netcdf-4.3.0/nc_test'
> make[3]: Entering directory 
> `/gpfs/scratch3/jungmin/local/netcdf-4.3.0/nc_test'
> PASS: t_nc
> PASS: tst_small
> PASS: nc_test
> PASS: tst_misc
> PASS: tst_norm
> PASS: tst_names
> ../test-driver: line 95:  7548 Segmentation fault      "$@" >$log_file 2>&1
> FAIL: tst_nofill
> PASS: tst_nofill2
> PASS: tst_nofill3
> PASS: tst_atts3
> PASS: run_diskless.sh
> make[4]: Entering directory 
> `/gpfs/scratch3/jungmin/local/netcdf-4.3.0/nc_test'
> make[4]: Nothing to be done for `all'.
> make[4]: Leaving directory `/gpfs/scratch3/jungmin/local/netcdf-4.3.0/nc_test'
> ============================================================================
> Testsuite summary for netCDF 4.3.0
> ============================================================================
> # TOTAL: 11
> # PASS:  10
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  1
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See nc_test/test-suite.log
> Please report to address@hidden
> ======================================
> make[3]: *** [test-suite.log] Error 1
> make[3]: Leaving directory `/gpfs/scratch3/jungmin/local/netcdf-4.3.0/nc_test'
> make[2]: *** [check-TESTS] Error 2
> make[2]: Leaving directory `/gpfs/scratch3/jungmin/local/netcdf-4.3.0/nc_test'
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory `/gpfs/scratch3/jungmin/local/netcdf-4.3.0/nc_test'
> make: *** [check-recursive] Error 1
> jungmlee@fen:/gpfs/scratch3/jungmin/local/netcdf-4.3.0> make check > 
> make_check.log
> ../test-driver: line 95: 11497 Segmentation fault      "$@" >$log_file 2>&1
> make[3]: *** [test-suite.log] Error 1
> make[2]: *** [check-TESTS] Error 2
> make[1]: *** [check-am] Error 2
> make: *** [check-recursive] Error 1
> 
> ======================================
> I attach config.log, test-suite.log and the log after i hit 'make check'.
> I would appreciate greatly if you could help me with this problem.
> 
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: TDK-633863
Department: Support netCDF
Priority: Normal
Status: Closed