[netCDF #SDC-125933]: Make Check Test Fail -- Told to report to you.

Aha, it looks like you should have used "-L" instead of "-I" in LDFLAGS:

> setenv LDFLAGS -I/usr/local/netcdf/lib
  setenv LDFLAGS -L/usr/local/netcdf/lib

See if that doesn't fix the problem ...

--Russ

> Yes sorry, that was a copy/paste error. To be sure, I tried it again and
> still the same error.
> Attached is the config.log for the failed netcdf fortran run. The netcdf c
> library should be 4.3.0, I just installed it today and it said the build
> was successful.
> 
> I have gcc and gfortran installed. Here's the entire output but you're
> probably looking for the versions? Both are 4.5
> 
> [new-host:local/netcdf/include] sastelma% gcc -v
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin12/4.5.4/lto-wrapper
> Target: x86_64-apple-darwin12
> Configured with: ../gcc-4.5.4/configure --prefix=/opt/local
> --build=x86_64-apple-darwin12
> --enable-languages=c,c++,objc,obj-c++,fortran,java
> --libdir=/opt/local/lib/gcc45 --includedir=/opt/local/include/gcc45
> --infodir=/opt/local/share/info --mandir=/opt/local/share/man
> --datarootdir=/opt/local/share/gcc-4.5 --with-local-prefix=/opt/local
> --with-libiconv-prefix=/opt/local --with-system-zlib --disable-nls
> --program-suffix=-mp-4.5
> --with-gxx-include-dir=/opt/local/include/gcc45/c++/ --with-gmp=/opt/local
> --with-mpfr=/opt/local --with-mpc=/opt/local --with-ppl=/opt/local
> --enable-stage1-checking --disable-multilib --with-as=/opt/local/bin/as
> --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=
> https://trac.macports.org/newticket --enable-lto
> --with-pkgversion='MacPorts gcc45 4.5.4_6'
> Thread model: posix
> gcc version 4.5.4 (MacPorts gcc45 4.5.4_6)
> 
> [new-host:local/netcdf/include] sastelma% gfortran -v
> Using built-in specs.
> COLLECT_GCC=gfortran
> COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin12/4.5.4/lto-wrapper
> Target: x86_64-apple-darwin12
> Configured with: ../gcc-4.5.4/configure --prefix=/opt/local
> --build=x86_64-apple-darwin12
> --enable-languages=c,c++,objc,obj-c++,fortran,java
> --libdir=/opt/local/lib/gcc45 --includedir=/opt/local/include/gcc45
> --infodir=/opt/local/share/info --mandir=/opt/local/share/man
> --datarootdir=/opt/local/share/gcc-4.5 --with-local-prefix=/opt/local
> --with-libiconv-prefix=/opt/local --with-system-zlib --disable-nls
> --program-suffix=-mp-4.5
> --with-gxx-include-dir=/opt/local/include/gcc45/c++/ --with-gmp=/opt/local
> --with-mpfr=/opt/local --with-mpc=/opt/local --with-ppl=/opt/local
> --enable-stage1-checking --disable-multilib --with-as=/opt/local/bin/as
> --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=
> https://trac.macports.org/newticket --enable-lto
> --with-pkgversion='MacPorts gcc45 4.5.4_6'
> Thread model: posix
> gcc version 4.5.4 (MacPorts gcc45 4.5.4_6)
> 
> Thank you!
> Sigourney Stelma
> 
> 
> address@hidden> wrote:
> 
> > Sigourney
> >
> > > That did not work. I got the same exact error as in my previous email.
> > > Here's what I'm putting into the terminal:
> > >
> > > setenv CC gcc
> > > setenv CFLAGS -m64
> > > setenv CXX g++
> > > setenv CXXFLAGS -m64
> > > setenv FC gfortran
> > > setenv FCFLAGS -m64
> > > setenv FFLAGS -m64
> > > setenv F77 gfortran
> > > FC gfortran
> > > setenv YLD_LIBRARY_PATH /usr/local/netcdf/lib
> >
> > Was the above a copy-and-paste error?  You should have used
> >
> >   setenv DYLD_LIBRARY_PATH /usr/local/netcdf/lib
> >
> > > setenv CPPFLAGS -I/usr/local/netcdf/include
> > > setenv LDFLAGS -I/usr/local/netcdf/lib
> > > ./configure --prefix=/usr/local/netcdf
> >
> > Please send us your config.log file for the failed Fortran build,
> > and also the version of the netCDF C library you installed under
> > /usr/local/netcdf.
> >
> > Also, what is the output from
> >
> >   $ gcc --version
> >   $ gfortran --version
> >
> > Another way to get gfortran installed on a Mac OSX platform is
> > to use the macports.org package management system, with:
> >
> >   $ port netcdf-fortran
> >
> > --Russ
> >
> > > Thanks!
> > > Sigourney
> > >
> > >
> > > address@hidden> wrote:
> > >
> > > > Hi Sigourney,
> > > >
> > > > > I'm trying to build netcdf fortran with gfortran. I got an error
> > during
> > > > the
> > > > > 'make check' stage of my build and it told me to contact you. Here's
> > the
> > > > > error:
> > > > >
> > > > > dyld: Symbol not found: _ncerr
> > > > > Referenced from:
> > > > >
> > > >
> > /Users/sastelma/downloads/netcdf-fortran-4.2/fortran/.libs/libnetcdff.5.dylib
> > > > > Expected in: flat namespace
> > > > > in
> > > > >
> > > >
> > /Users/sastelma/downloads/netcdf-fortran-4.2/fortran/.libs/libnetcdff.5.dylib
> > > > > /bin/sh: line 1: 51512 Trace/BPT trap: 5       ${dir}$tst
> > > > > FAIL: nf_test
> > > > >
> > > > > *** Copying file with fill values.
> > > > > *** SUCCESS!
> > > > > PASS: create_fills.sh
> > > > > dyld: Symbol not found: _ncerr
> > > > > Referenced from:
> > > > >
> > > >
> > /Users/sastelma/downloads/netcdf-fortran-4.2/fortran/.libs/libnetcdff.5.dylib
> > > > > Expected in: flat namespace
> > > > > in
> > > > >
> > > >
> > /Users/sastelma/downloads/netcdf-fortran-4.2/fortran/.libs/libnetcdff.5.dylib
> > > > > /bin/sh: line 1: 51537 Trace/BPT trap: 5       ${dir}$tst
> > > > > FAIL: tst_f90
> > > > > ================================================
> > > > > 2 of 3 tests failed
> > > > > Please report to address@hidden
> > > > > ================================================
> > > > >
> > > > > I'm not sure at all how to fix this issue.
> > > >
> > > > I assume you're following the build instructions here:
> > > >
> > > >   http://www.unidata.ucar.edu/netcdf/docs/netcdf-fortran-install.html
> > > >
> > > > and that you're building on a Mac OSX platform, using shared libraries.
> > > >
> > > > Did you set the environment variable DYLD_LIBRARY_PATH to contain the
> > > > library directory where the netCDF C library is installed, as mentioned
> > > > in step 3 of the build instructions under "Using shared libraries"?  If
> > > > not, please try again with that environment variable set and let us
> > know
> > > > if that doesn't fix the problem.
> > > >
> > > > --Russ
> > > >
> > > > > Thank you,
> > > > > Sigourney Stelma
> > > > >
> > > > >
> > > > Russ Rew                                         UCAR Unidata Program
> > > > address@hidden                      http://www.unidata.ucar.edu
> > > >
> > > >
> > > >
> > > > Ticket Details
> > > > ===================
> > > > Ticket ID: SDC-125933
> > > > Department: Support netCDF
> > > > Priority: Normal
> > > > Status: Closed
> > > >
> > > >
> > >
> > >
> > Russ Rew                                         UCAR Unidata Program
> > address@hidden                      http://www.unidata.ucar.edu
> >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: SDC-125933
> > Department: Support netCDF
> > Priority: Normal
> > Status: Closed
> >
> >
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: SDC-125933
Department: Support netCDF
Priority: Normal
Status: Closed