[netCDF #JZT-105309]: neCDF 4.3.0 installation issue - Can't find or link to the hdf5 library

Hi Peter,

> I am trying to install netCDF 4.3.0 on a Scientific Linux 6.4  system
> with Intel studio c and fortran compilers but have hit a problem, wonder
> if you can help resolve this.
> 
> I used the following commands (in a script) to install hdf5-1.8.9, which
> appears to have gone through the "make check" without major problems.
> 
> When it comes down to install netCDF 4.3.0, it then complains with the
> above error.
> 
> As you can see from the script, I have already exported the environment
> variables CPPFLAGS, LDFLAGS, and LD_LIBRARY_PATH to point to the installed
> location on hdf5-1.8.9.  I have also confirmed the hdf5 installed location
> being correct.
> 
> However the fault persists.  I have attached the log on this installation.

I can't duplicate the problem here, using HDF5-1.8.9, netCDF 4.3.0, and a shell
script very similar to yours, except that I use gcc rather than Intel 
compilers, and
I didn't enable fortran or cxx in the HDF libraries (those APIs aren't used by
netCDF-4).  I note that you repeated the HDF5-1.8.9 library location in the
first and third position of your LD_LIBRARY_PATH and LD_RUN_PATH env
variables, but that shouldn't cause a problem.

Does it all work if you use gcc instead of icc?

--Russ


> Much grateful if anyone can advise on this.
> 
> Regards,
> 
> Peter Chiu
> 
> STFC Rutherford Appleton Laboratory
> UK
> echo "Enable intel 64 compilers"
> #intel64
> source /opt/intel/bin/compilervars.sh intel64
> 
> CC=/opt/intel/composer_xe_2013.0.079/bin/intel64/icc
> 
> FC=/opt/intel/composer_xe_2013.0.079/bin/intel64/ifort
> 
> CXX=/opt/intel/composer_xe_2013.0.079/bin/intel64/icpc
> 
> export CC FC CXX
> ls $CC $FC $CXX
> 
> echo "Start installing hdf5-1.8.9 with intel"
> cd /usr/local/kits/netcdf-src/hdf5-1.8.9
> 
> make distclean
> 
> ./configure --prefix=/usr/local/hdf5-1.8.9intel --with-szlib=/usr/local/szip \
> --with-zlib=/usr/local/zlib1.2.7 --enable-fortran --enable-cxx 
> --disable-shared
> echo; echo "`date`: make"
> make
> echo; echo "`date`: make check"
> make check
> echo; echo "`date`: make check install"
> make install
> 
> echo
> 
> echo "Set CPPFLAGS..."
> CPPFLAGS='-I/usr/local/hdf5-1.8.9intel/include'
> 
> ls /usr/local/hdf5-1.8.9intel/include /usr/local/szip/include 
> /usr/local/zlib1.2.7/include
> 
> echo "Set LDFLAGS..."
> LDFLAGS='-L/usr/local/hdf5-1.8.9intel/lib'
> 
> ls /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64 
> /usr/local/hdf5-1.8.9intel/lib /usr/local/szip/lib /usr/local/zlib1.2.7/lib
> export CPPFLAGS LDFLAGS
> 
> LD_LIBRARY_PATH="/usr/local/hdf5-1.8.9intel/lib:/opt/intel/composer_xe_2013.0.079/compiler/lib/intel64:/usr/local/hdf5-1.8.9intel/lib:/usr/local/szip/lib:/usr/local/zlib1.2.7/lib:$LD_LIBRARY_PATH"
> LD_RUN_PATH="/usr/local/hdf5-1.8.9intel/lib:/opt/intel/composer_xe_2013.0.079/compiler/lib/intel64:/usr/local/hdf5-1.8.9intel/lib:/usr/local/szip/lib:/usr/local/zlib1.2.7/lib:$LD_RUN_PATH"
> 
> export LD_LIBRARY_PATH LD_RUN_PATH
> 
> cd /usr/local/kits/netcdf-src/netcdf-4.3.0
> 
> make distclean
> 
> ./configure --prefix=/usr/local/netcdf-4.3.0ifort64-hdf5-1.8.9 
> --disable-dap-remote-tests
> 
> make
> make check
> 
> 
> --
> Scanned by iCritical.
> 
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: JZT-105309
Department: Support netCDF
Priority: Normal
Status: Closed