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[netCDF #SNP-665192]: make check fails for netcdf-cxx4-4.2 on SUSE 10.4 PPC system.
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- Subject: [netCDF #SNP-665192]: make check fails for netcdf-cxx4-4.2 on SUSE 10.4 PPC system.
- Date: Wed, 12 Jun 2013 15:56:51 -0600
Hi Prentice,
> Writing to you as instructed in error message. 'make check' failed for
> me on the front-end node to my IBM Blue Gene/P system. The front-end
> node is running SUSE 10.4 on a Power6 processor using the gcc 4.1.2
> compiles that are included with SUSE 10.4 A transcript f the 'make
> check' output is below.
I'm assuming the 4.1.2 version you're referring to is for netCDF-4.1.2
(March 2011) rather than gcc.
The error you're seeing in the make check for netcdf-cxx4-4.2 appears to
be caused by calling the ncFile destructor twice, which results in calling
nc_close() twice on the same file handle, resulting in an error caught in
the HDF layer rather than the netCDF layer.
I tried to reproduce this problem using netCDF-4.1.2 linked with
HDF5-1.8.4-patch1 (which would have been the version available in April
2011), but "make check" completed successfully.
So I can't duplicate the problem. I also tried netcdf-cxx4-4.2 linked
with the latest netCDF-4.3.0 built with HDF5-1.8.11, and "make check"
also completed successfully.
I don't have access to SUSE or IBM Blue Gene/P platforms, but just ran
the tests to try to reproduce the problem on a Fedora 14 Linux platform.
All I can suggest is that you try building from source with the most
recent versions of the netCDF C and HDF5 software, in hopes that the
bug you're seeing on your platform was fixed since the older versions
were released.
--Russ
> Let me know if you'd like any additional information about this system.
> I can send you logs of the configure and make output, if you're interested.
>
> $ ./configure --prefix=/usr/local/netcdf-cxx4-4.2 \
>
> CPPFLAGS=-I/usr/local/include \
>
> LDFLAGS=-L/usr/local/lib \
>
> 2>&1 | tee configure.log
>
> $ make 2>&1 | tee make.log
>
> $ make check
>
> Making check in cxx4
>
> make[1]: Entering directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make test_classic test_group test_dim test_att test_var test_var2 test_type
>
> make[2]: Entering directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make[2]: `test_classic' is up to date.
>
> make[2]: `test_group' is up to date.
>
> make[2]: `test_dim' is up to date.
>
> make[2]: `test_att' is up to date.
>
> make[2]: `test_var' is up to date.
>
> make[2]: `test_var2' is up to date.
>
> make[2]: `test_type' is up to date.
>
> make[2]: Leaving directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make check-TESTS
>
> make[2]: Entering directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> Test creation of classic format file ----------- passed
>
> PASS: test_classic
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") ----------- passed
>
> Testing getGroupCount([netCDF::Location]) ----------- passed
>
> Testing getGroups([netCDF::Location]) ----------- passed
>
> Testing getGroups("name",[netCDF::Location]) ----------- passed
>
> Testing getGroup("name",[netCDF::Location]) ----------- passed
>
> Testing getParentGroup() ----------- passed
>
> PASS: test_group
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing addDim("dimensionName") -----------
> passed
>
> Testing NcDim::isUnlimited() -----------
> passed
>
> Testing NcDim::isNull() -----------
> passed
>
> Testing NcDim::getSize() -----------
> passed
>
> Testing NcDim::getParentGroup() -----------
> passed
>
> Testing NcDim::getName() -----------
> passed
>
> Testing NcGroup::getDimCount([netCDF::Location]) -----------
> passed
>
> Testing NcGroup::getDims([netCDF::Location]) -----------
> passed
>
> Testing NcGroup::getDims("name",[netCDF::Location]) -----------
> passed
>
> Testing NcGroup::getDim("name",[netCDF::Location]) -----------
> passed
>
> PASS: test_dim
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing putAtt("attName","typeName",len,dataValues) -----------
> passed
>
> Testing getAttLength() -----------
> passed
>
> Testing getName() -----------
> passed
>
> Testing getType() -----------
> passed
>
> Testing getParentGroup() -----------
> passed
>
> Testing getValues() -----------
> passed
>
> Testing attCount([netCDF::Location]) -----------
> passed
>
> Testing getAtts([netCDF::Location]) -----------
> passed
>
> Testing getAtt("name",[netCDF::Location]) -----------
> passed
>
> Testing getAtts("name",[netCDF::Location]) -----------
> passed
>
> PASS: test_att
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing addDim("dimensionName") -----------
> passed
>
> Testing addVar("varName","typeName","dimName") -----------
> passed
>
> Preparing for tests...
>
> Testing addCount([netCDF::Location]) -----------
> passed
>
> Testing getVars([netCDF::Location]) -----------
> passed
>
> Testing getVar("name",[netCDF::Location]) -----------
> passed
>
> Testing getVars("name",[netCDF::Location]) -----------
> passed
>
> PASS: test_var
>
> i =0 vector=10
>
> i =1 vector=12
>
> i =2 vector=14
>
> i =3 vector=16
>
> i =4 vector=0
>
> i =5 vector=0
>
> i =6 vector=0
>
> i =7 vector=0
>
> i =8 vector=0
>
> i =9 vector=0
>
> 1
>
> fill parameter =13
>
> checksum =0
>
> chunking parameters: chunk mode=0 Chunk sizes=5
>
> endianness =1
>
> shuffleFilterEnabled = 0
>
> deflateFilterEnabled = 1
>
> deflateLevel = 9
>
> parentGroup =/
>
> name =var_2
>
> dimCount =1
>
> dimName =dim1
>
> nctypeName =int
>
> varAtt variable name =var_2
>
> PASS: test_var2
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing getName() -----------
> passed
>
> Testing getParentGroup() and isNull() -----------
> passed
>
> Testing getSize() -----------
> passed
>
> Testing getTypeClass() -----------
> passed
>
> Testing getTypeClassName() -----------
> passed
>
> Testing creating new Compound Type -----------
> passed
>
> Testing NcCompoundType::addMember() -----------
> passed
>
> Testing NcCompoundType==>NcType && NcType::getTypeClass() -----------
> passed
>
> Testing compoundClass.getMemberCount() -----------
> passed
>
> Testing NcCompoundType::getMemberDimCount() -----------
> passed
>
> Testing NcCompoundType::getMemberShape(index) -----------
> passed
>
> Testing NcCompoundType::getMember(index).getName() -----------
> passed
>
> Testing NcCompoundType == NcType -----------
> passed
>
> Testing NcCompoundType == NcCompoundType -----------
> passed
>
> Testing creating new Vlen Type -----------
> passed
>
> Testing NcVlenType::getTypeClass() -----------
> passed
>
> Testing NcVlenType::getTypeClassName() -----------
> passed
>
> Testing NcVlenType::getName() -----------
> passed
>
> Testing NcVlenType::getBaseType(); == and != -----------
> passed
>
> Testing NcVlenType constructors -----------
> passed
>
> Testing creating new Enum Type -----------
> passed
>
> Testing NcEnumType::addMember() -----------
> passed
>
> Testing NcEnumType::getBaseType() == and != -----------
> passed
>
> Testing NcEnumType::getMemberCount() -----------
> passed
>
> Testing NcEnumType::getMemberNameFromIndex(index) -----------
> passed
>
> terminate called after throwing an instance of 'netCDF::exceptions::NcHdfErr'
>
> what(): NcHdfErr: An error was reported by the HDF5 layer.
>
> file: ncFile.cpp line:15
>
> Testing NcEnumType::getMemberNameFromValue(index) /bin/sh: line 1:
> 8855 Aborted ${dir}$tst
>
> FAIL: test_type
>
> ================================================
>
> 1 of 7 tests failed
>
> Please report to address@hidden
>
> ================================================
>
> make[2]: *** [check-TESTS] Error 1
>
> make[2]: Leaving directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make[1]: *** [check-am] Error 2
>
> make[1]: Leaving directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make: *** [check-recursive] Error 1
>
> --
> Prentice Bisbal
> Manager of Information Technology
> Rutgers Discovery Informatics Institute (RDI2)
> Rutgers University
> http://rdi2.rutgers.edu
>
>
Russ Rew UCAR Unidata Program
address@hidden http://www.unidata.ucar.edu
Ticket Details
===================
Ticket ID: SNP-665192
Department: Support netCDF
Priority: Normal
Status: Closed
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