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[netCDF #QCG-518842]: make check failures

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  • Subject: [netCDF #QCG-518842]: make check failures
  • Date: Mon, 29 Oct 2012 14:25:41 -0600
Hi Iain.

Have you tried setting LD_LIBRARY_PATH=/usr/local/lib before running "make 
check"?

Are you running "make check" using sudo or as root?  In that case, it may be 
that
your /etc/sudoers is not configured to inherit environment variables, as there 
are
security problems that can reveal.  Typically, you should only run "make 
install"
as root, but not "make check".

--Russ

> we are trying to install netcdf but make check fails.
> 
> # make check
> Making check in include
> make[1]: Entering directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/include'
> make[1]: Nothing to be done for `check'.
> make[1]: Leaving directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/include'
> Making check in oc
> make[1]: Entering directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/oc'
> make[1]: Nothing to be done for `check'.
> make[1]: Leaving directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/oc'
> Making check in h5_test
> make[1]: Entering directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/h5_test'
> make  tst_h_files tst_h_files2 tst_h_files4 tst_h_atts tst_h_atts3
> tst_h_atts4 tst_h_vars tst_h_vars2 tst_h_vars3 tst_h_grps
> tst_h_compounds tst_h_compounds2 tst_h_wrt_cmp tst_h_rd_cmp tst_h_vl
> tst_h_opaques tst_h_strings tst_h_strings1 tst_h_strings2 tst_h_ints
> tst_h_dimscales tst_h_dimscales1 tst_h_dimscales2 tst_h_dimscales3
> tst_h_enums tst_h_dimscales4
> make[2]: Entering directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/h5_test'
> make[2]: `tst_h_files' is up to date.
> make[2]: `tst_h_files2' is up to date.
> make[2]: `tst_h_files4' is up to date.
> make[2]: `tst_h_atts' is up to date.
> make[2]: `tst_h_atts3' is up to date.
> make[2]: `tst_h_atts4' is up to date.
> make[2]: `tst_h_vars' is up to date.
> make[2]: `tst_h_vars2' is up to date.
> make[2]: `tst_h_vars3' is up to date.
> make[2]: `tst_h_grps' is up to date.
> make[2]: `tst_h_compounds' is up to date.
> make[2]: `tst_h_compounds2' is up to date.
> make[2]: `tst_h_wrt_cmp' is up to date.
> make[2]: `tst_h_rd_cmp' is up to date.
> make[2]: `tst_h_vl' is up to date.
> make[2]: `tst_h_opaques' is up to date.
> make[2]: `tst_h_strings' is up to date.
> make[2]: `tst_h_strings1' is up to date.
> make[2]: `tst_h_strings2' is up to date.
> make[2]: `tst_h_ints' is up to date.
> make[2]: `tst_h_dimscales' is up to date.
> make[2]: `tst_h_dimscales1' is up to date.
> make[2]: `tst_h_dimscales2' is up to date.
> make[2]: `tst_h_dimscales3' is up to date.
> make[2]: `tst_h_enums' is up to date.
> make[2]: `tst_h_dimscales4' is up to date.
> make[2]: Leaving directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/h5_test'
> make  check-TESTS
> make[2]: Entering directory
> `/usr/local/src/netcdf/4.2.1.1/netcdf-4.2.1.1/h5_test'
> ./tst_h_files: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_files
> ./tst_h_files2: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_files2
> ./tst_h_files4: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_files4
> ./tst_h_atts: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_atts
> ./tst_h_atts3: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_atts3
> ./tst_h_atts4: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_atts4
> ./tst_h_vars: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_vars
> ./tst_h_vars2: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_vars2
> ./tst_h_vars3: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_vars3
> ./tst_h_grps: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_grps
> ./tst_h_compounds: error while loading shared libraries:
> libhdf5_hl.so.7: cannot open shared object file: No such file or
> directory
> FAIL: tst_h_compounds
> ./tst_h_compounds2: error while loading shared libraries:
> libhdf5_hl.so.7: cannot open shared object file: No such file or
> directory
> FAIL: tst_h_compounds2
> ./tst_h_wrt_cmp: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_wrt_cmp
> ./tst_h_rd_cmp: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_rd_cmp
> ./tst_h_vl: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_vl
> ./tst_h_opaques: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_opaques
> ./tst_h_strings: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_strings
> ./tst_h_strings1: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_strings1
> ./tst_h_strings2: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_strings2
> ./tst_h_ints: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_ints
> ./tst_h_dimscales: error while loading shared libraries:
> libhdf5_hl.so.7: cannot open shared object file: No such file or
> directory
> FAIL: tst_h_dimscales
> ./tst_h_dimscales1: error while loading shared libraries:
> libhdf5_hl.so.7: cannot open shared object file: No such file or
> directory
> FAIL: tst_h_dimscales1
> ./tst_h_dimscales2: error while loading shared libraries:
> libhdf5_hl.so.7: cannot open shared object file: No such file or
> directory
> FAIL: tst_h_dimscales2
> ./tst_h_dimscales3: error while loading shared libraries:
> libhdf5_hl.so.7: cannot open shared object file: No such file or
> directory
> FAIL: tst_h_dimscales3
> ./tst_h_enums: error while loading shared libraries: libhdf5_hl.so.7:
> cannot open shared object file: No such file or directory
> FAIL: tst_h_enums
> ./tst_h_dimscales4: error while loading shared libraries:
> libhdf5_hl.so.7: cannot open shared object file: No such file or
> directory
> FAIL: tst_h_dimscales4
> ================================================
> 26 of 26 tests failed
> Please report to address@hidden
> ================================================
> 
> Our system is a RHEL 6.3 64bit system. Any ideas what might be wrong?
> 
> ll /usr/local/lib/libhdf5*
> -rw-r--r--. 1 root root 5866984 Oct 29 15:23 /usr/local/lib/libhdf5.a
> -rw-r--r--. 1 root root  205578 Oct 29 15:23 /usr/local/lib/libhdf5_hl.a
> -rwxr-xr-x. 1 root root     975 Oct 29 15:23
> /usr/local/lib/libhdf5_hl.la
> lrwxrwxrwx. 1 root root      19 Oct 29 15:23
> /usr/local/lib/libhdf5_hl.so -> libhdf5_hl.so.7.0.3
> lrwxrwxrwx. 1 root root      19 Oct 29 15:23
> /usr/local/lib/libhdf5_hl.so.7 -> libhdf5_hl.so.7.0.3
> -rwxr-xr-x. 1 root root  136299 Oct 29 15:23
> /usr/local/lib/libhdf5_hl.so.7.0.3
> -rwxr-xr-x. 1 root root     928 Oct 29 15:23 /usr/local/lib/libhdf5.la
> -rw-r--r--. 1 root root    2953 Oct 29 15:23
> /usr/local/lib/libhdf5.settings
> lrwxrwxrwx. 1 root root      16 Oct 29 15:23 /usr/local/lib/libhdf5.so
> -> libhdf5.so.7.0.3
> lrwxrwxrwx. 1 root root      16 Oct 29 15:23 /usr/local/lib/libhdf5.so.7
> -> libhdf5.so.7.0.3
> -rwxr-xr-x. 1 root root 3185987 Oct 29 15:23
> /usr/local/lib/libhdf5.so.7.0.3
> 
> thanks
> 
> iain
> 
> --
> 
> Iain Morrison
> IT Manager
> MRC Epidemiology Unit
> Institute of Metabolic Science
> Box 285
> Addenbrooke's Hospital
> Hills Road
> Cambridge
> CB2 0QQ
> Tel 01223 769200
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: QCG-518842
Department: Support netCDF
Priority: Normal
Status: Closed