[netCDF #ACS-482645]: Build Netcdf-4.2-fortran

> Hi,
> 
> I Build netcdf 4.2 fortran on redhat 6.1 s390x and  make check fail.
> 
> Build with:
> 
> CPPFLAGS="-I/usr/local/include -DgFortran" LDFLAGS=-L/usr/local/lib
> LD_LIBRARY_PATH=/usr/local/lib FC=mpif90 CXX=mpicxx CC=mpicc ./configure
> make
> 
> Erro of make check:
> 
> make  check-TESTS
> make[2]: Entrando no diretório `/usr/src/netcdf-fortran-4.2/nf_test'
> 
> *** Testing netCDF-3 Fortran 77 API.
> NetCDF version: 4.2.1.1 of Aug 16 2012 20:58:36
> $
> /bin/sh: line 5: 33196 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: nf_test
> 
> *** Copying file with fill values.
> *** SUCCESS!
> PASS: create_fills.sh
> 

I'll need more information.  It looks like you are getting a segmentation
violation running the shell script nf_test/nf_test, but the shell script
nf_test/create_fills.sh runs successfully.  I don't know why nf_test is
getting a segmentation violation.  Could you please send the output from 
running the following command in that directory (netcdf-4.2.1.1/nf_test):

  /bin/sh -x ./nf_test

The expected output (and what I get) is:

+ sed_quote_subst='s/\([`"$\\]\)/\\\1/g'
+ test -n ''
+ case `(set -o) 2>/dev/null` in
+ set -o posix
+ BIN_SH=xpg4
+ export BIN_SH
+ DUALCASE=1
+ export DUALCASE
+ unset CDPATH
+ relink_command='(cd /home/russ/nf/netcdf-fortran-4.2/nf_test; { test -z 
"${LIBRARY_PATH+set}" || unset LIBRARY_PATH || { LIBRARY_PATH=; export 
LIBRARY_PATH; }; }; { test -z "${COMPILER_PATH+set}" || unset COMPILER_PATH || 
{ COMPILER_PATH=; export COMPILER_PATH; }; }; { test -z 
"${GCC_EXEC_PREFIX+set}" || unset GCC_EXEC_PREFIX || { GCC_EXEC_PREFIX=; export 
GCC_EXEC_PREFIX; }; }; { test -z "${LD_RUN_PATH+set}" || unset LD_RUN_PATH || { 
LD_RUN_PATH=; export LD_RUN_PATH; }; }; { test -z "${LD_LIBRARY_PATH+set}" || 
unset LD_LIBRARY_PATH || { LD_LIBRARY_PATH=; export LD_LIBRARY_PATH; }; }; 
PATH=/home/russ/bin:/opt/epd/bin:/opt/pgi/bin:/usr/local/bin:/usr/bin:/bin:/upc/share/ed/local/buddy/bin:/opt/csw/gcc4/bin:/usr/ccs/bin:/upc/netcdf/bin:/upc/udunits/bin:/upc/decoders/bin:/usr/local/ldm/bin:/usr/bin/X11:/usr/proc/bin:/usr/sbin:/sbin:/usr/local/hosts:/usr/perl5/bin:/usr/ucb;
 export PATH; gfortran -I../fortran -I../f90 -g -O2 -o $progdir/$file 
test_get.o test_put.o nf_error.o nf_t
 est.o test_read.o test_write.o util.o fortlib.o  
../fortran/.libs/libnetcdff.so -lnetcdf -Wl,-rpath 
-Wl,/home/russ/nf/netcdf-fortran-4.2/fortran/.libs -Wl,-rpath 
-Wl,/usr/local/lib)'
+ test '' = '%%%MAGIC variable%%%'
+ test '' '!=' '%%%MAGIC variable%%%'
+ file=./nf_test
+ ECHO='printf %s\n'
+ lt_option_debug=
+ func_parse_lt_options ./nf_test
+ lt_script_arg0=./nf_test
+ shift
+ test -n ''
++ printf '%s\n' ./nf_test
++ /bin/sed 's%/[^/]*$%%'
+ thisdir=.
+ test x. = x./nf_test
++ ls -ld ./nf_test
++ /bin/sed -n 's/.*-> //p'
+ file=
+ test -n ''
+ WRAPPER_SCRIPT_BELONGS_IN_OBJDIR=no
+ test no = yes
++ cd .
++ pwd
+ absdir=/home/russ/nf/netcdf-fortran-4.2/nf_test
+ test -n /home/russ/nf/netcdf-fortran-4.2/nf_test
+ thisdir=/home/russ/nf/netcdf-fortran-4.2/nf_test
+ program=lt-nf_test
+ progdir=/home/russ/nf/netcdf-fortran-4.2/nf_test/.libs
+ test '!' -f /home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/lt-nf_test
++ ls -1dt /home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/lt-nf_test 
/home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/../lt-nf_test
++ /bin/sed 1q
+ file=/home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/lt-nf_test
+ test X/home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/lt-nf_test '!=' 
X/home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/lt-nf_test
+ test -f /home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/lt-nf_test
+ test '' '!=' '%%%MAGIC variable%%%'
+ func_exec_program
+ func_exec_program_core
+ test -n ''
+ exec /home/russ/nf/netcdf-fortran-4.2/nf_test/.libs/lt-nf_test
 
 *** Testing netCDF-3 Fortran 77 API.
 NetCDF version: 4.2.1 of Aug  3 2012 09:40:57 $                                
                 
 *** testing nf_strerror ... 
 *** testing nf_open ... 
 *** testing nf_close ... 
 *** testing nf_inq ... 
 *** testing nf_inq_dimid ... 
 *** testing nf_inq_dim ... 
 *** testing nf_inq_dimlen ... 
 *** testing nf_inq_dimname ... 
  ...

Thanks!

--Russ

> *** Testing netCDF v2 api for F77.
> /bin/sh: line 5: 33250 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: tst_f77_v2
> 
> *** Testing definition of netCDF-4 vars from Fortran 77.
> /bin/sh: line 5: 33293 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_vars
> 
> *** Testing netCDF-4 vars from F77 with new types.
> /bin/sh: line 5: 33338 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_vars2
> 
> *** Testing enum and opaque types.
> /bin/sh: line 5: 33383 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_vars3
> 
> *** Testing VLEN types.
> /bin/sh: line 5: 33428 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_vars4
> 
> *** Testing compound types.
> /bin/sh: line 5: 33473 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_vars5
> 
> *** Testing fill values.
> /bin/sh: line 5: 33518 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_vars6
> 
> *** Testing netCDF-4 compound type from F77.
> /bin/sh: line 5: 33563 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_types
> 
> *** Testing netCDF-4 compound types from F77 some more.
> /bin/sh: line 5: 33608 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_types2
> 
> *** Testing netCDF-4 user-defined types and groups.
> /bin/sh: line 5: 33653 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_types3
> 
> *** Testing netCDF-4 groups from F77.
> /bin/sh: line 5: 33698 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_groups
> 
> *** Testing definition of netCDF-4 vars from Fortran 90.
> /bin/sh: line 5: 33743 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: f90tst_vars
> 
> *** Testing new netCDF-4 types from Fortran 90.
> /bin/sh: line 5: 33787 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: tst_types
> 
> *** Testing netCDF-4 64-bit integer types from Fortran 90.
> /bin/sh: line 5: 33831 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: tst_types2
> PASS: f90tst_vars_vlen
> 
> *** testing simple netCDF-4 file.
> /bin/sh: line 5: 33916 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: tst_f90_nc4
> 
> *** Testing netCDF-4 groups from Fortran 90.
> /bin/sh: line 5: 33960 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: f90tst_grps
> 
> *** Testing netCDF-4 fill values.
> /bin/sh: line 5: 34004 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: f90tst_fill
> 
> *** Testing netCDF-4 fill values with unlimited dimension.
> /bin/sh: line 5: 34048 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: f90tst_fill2
> 
> *** Testing definition of netCDF-4 vars from Fortran 90.
> /bin/sh: line 5: 34092 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: f90tst_vars3
> 
> *** Testing definition of netCDF-4 vars from Fortran 90.
> /bin/sh: line 5: 34136 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: f90tst_vars4
> 
> *** Testing definition of netCDF-4 vars from Fortran 90.
> /bin/sh: line 5: 34180 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: f90tst_vars2
> 
> *** Testing v2 fortran API with netCDF-4.
> /bin/sh: line 5: 34224 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftst_v2
> 
> *** Testing netCDF-2 Fortran 77 API.
> *** testing nccre ...
> /bin/sh: line 5: 34267 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: ftest
> 
> *** Testing netCDF-3 Fortran 90 API.
> /bin/sh: line 5: 34311 Falha de segmentação  (imagem do núcleo
> gravada)${dir}$tst
> FAIL: tst_f90
> ================================================
> 25 of 27 tests failed
> Please report to address@hidden
> ================================================
> make[2]: ** [check-TESTS] Erro 1
> make[2]: Saindo do diretório `/usr/src/netcdf-fortran-4.2/nf_test'
> make[1]: ** [check-am] Erro 2
> make[1]: Saindo do diretório `/usr/src/netcdf-fortran-4.2/nf_test'
> make: ** [check-recursive] Erro 1
> 
> thanks
> 
> 
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: ACS-482645
Department: Support netCDF
Priority: Normal
Status: Closed