[netCDF #FUL-645927]: netcdf make check tests fail to locate libhdf5.so.7 and libhdf5_hl.so.7

Melanie,

> Thanks, that was the issue. Sorry about that, it's something I should have 
> realised.
> 
> However, I'm now getting a second error:
> 
> HDF5-DIAG: Error detected in HDF5 (1.8.8) thread 0:
> #000: H5Z.c line 1376 in H5Zget_filter_info(): Filter not defined
> major: Invalid arguments to routine
> minor: Bad value
> #001: H5Z.c line 1019 in H5Z_find(): required filter is not registered
> major: Data filters
> minor: Object not found
> *** Checking HDF5 deflate filter setting and getting...Sorry! Unexpected 
> result, tst_h_vars.c, line: 230
> FAIL: tst_h_vars
> 
> Currently googling for solutions but haven't found anything conclusive so far.

It's not finding zlib.  You need to have configured HDF5-1.8.8 with the 
--with-zlib= option
to tell it where to find zlib.  If you build HDF5 again with zlib, then 
netCDF-4.1.3 should
build OK with that HDF5 library ...

--Russ

> On 2012-03-12, at 6:20 PM, Unidata netCDF Support wrote:
> 
> > Hi Melanie,
> >
> > I think the problem may be that you are trying to execute "make check 
> > install"
> > using sudo, and the setting of LD_LIBRARY_PATH is not inherited by the root
> > user through sudo, as this would be a security problem.
> >
> > Try running "make check" as the same user who set LD_LIBRARY_PATH, but not
> > using sudo.  Then, if that works, you can run "sudo make install", which
> > will not need LD_LIBRARY_PATH set to /usr/local/lib to run correctly.
> >
> > In order to successfully run "make check" as a normal user after having
> > tried to run it with "sudo", you may need to first run "sudo make clean"
> > or start over from the compressed tar file.
> >
> > --Russ
> >
> >> I'm installing netcdf on Ubuntu 11.10. I've installed zlib and hdf5
> >> successfully and now I'm attempting to install netcdf4.1.3. My configure
> >> command is:
> >> sudo CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib ./configure
> >> --prefix=/usr/local --enable-netcdf-4 --enable-shared
> >> I've set $LD_LIBRARY_PATH and $LD_RUN_PATH to /usr/local/lib. The
> >> permissions are set correctly on the library files located in
> >> /usr/local/lib.
> >> However, when I run 'sudo make check install', I get the following error:
> >>
> >> make  check-TESTS
> >> make[2]: Entering directory `/home/mcooke/Downloads/netcdf-4.1.3/h5_test'
> >> ./tst_h_files: error while loading shared libraries: libhdf5.so.7:
> >> cannot open shared object file: No such file or directory
> >> FAIL: tst_h_files
> >> ./tst_h_files2: error while loading shared libraries: libhdf5.so.7:
> >> cannot open shared object file: No such file or directory
> >> FAIL: tst_h_files2
> >> ./tst_h_files4: error while loading shared libraries: libhdf5.so.7:
> >> cannot open shared object file: No such file or directory
> >> FAIL: tst_h_files4
> >> ./tst_h_atts: error while loading shared libraries: libhdf5_hl.so.7:
> >> cannot open shared object file: No such file or directory
> >> FAIL: tst_h_atts
> >>
> >> *** Checking HDF5 attribute functions some more.
> >> *** Tests successful!
> >> PASS: tst_h_atts3
> >>
> >> *** Checking HDF5 attribute functions for memory leaks.
> >> *** Tests successful!
> >> PASS: tst_h_atts4
> >> ./tst_h_vars: error while loading shared libraries: libhdf5.so.7: cannot
> >> open shared object file: No such file or directory
> >> [more similar failure messages]
> >> FAIL: tst_h_dimscales4
> >> ================================================
> >> 24 of 26 tests failed
> >> Please report to address@hidden
> >> ================================================
> >>
> >> I searched for this problem and found this support thread:
> >> from
> >> http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10724.html
> >> to
> >> http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10790.html
> >>
> >> When I try cd man4; make Doxyfile.stamp, I get an error:
> >> make: *** No rule to make target `Doxyfile.stamp'.  Stop.
> >>
> >>
> >> Any help would be appreciated.
> >> Thanks,
> >> -Melanie
> >>
> >>
> >
> > Russ Rew                                         UCAR Unidata Program
> > address@hidden                      http://www.unidata.ucar.edu
> >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: FUL-645927
> > Department: Support netCDF
> > Priority: Normal
> > Status: Closed
> >
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: FUL-645927
Department: Support netCDF
Priority: Normal
Status: Closed