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[netCDF #ORW-515290]: install error

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  • Subject: [netCDF #ORW-515290]: install error
  • Date: Sun, 12 Feb 2012 16:52:25 -0700
Hi,

Sorry it's taken so long to respond to your question.

> Full Name: ammar abdilghanie
> Email Address: address@hidden
> Organization: u of washington
> Package Version: netcdf-4.1.2 and hdf5-1.8.7
> Operating System:
> Hardware:
> Description of problem:
> 
> I am trying to install netcdf with parallel i/o support. I first installed
> zlib and hd5f which seem to work fine.
> 
> I then set
> 
> CPPFLAGS=-I/home/ammar/F90Netcdf/local/include


We have to set CPPFLAGS to include -DgFortran to get the right flags generated 
for mpif90 on our
platform, so could you try again, changing

  CPPFLAGS="-DgFortran -I/home/ammar/F90Netcdf/local/include"

You might also try netCDF 4.1.3 instead of 4.1.2, as the former has some bug 
fixes.

If it still doesn't work, could you please send us the information requested 
here:

  http://www.unidata.ucar.edu/netcdf/docs/netcdf-install/Reporting-Problems.html

Thanks.

--Russ


> CXXFLAGS=-I/home/ammar/F90Netcdf/local/include
> FFFLAGS=-I/home/ammar/F90Netcdf/local/include
> FCFLAGS=-I/shecky/local_par/include LDFLAGS=-L/shecky/local_par/lib
> 
> those are where I installed hdf5 and zlib
> 
> I then issued
> 
> FC=mpif90  CXX=mpicxx CC=mpicc ./configure --enable-parallel --disable-shared 
> --prefix=/home/ammar/F90Netcdf/local/netcdf
> 
> then make followed by make install.  I got
> 
> Congratulations! You have successfully installed netCDF!    |
> |                                                             |
> | You can use script "nc-config" to find out the relevant     |
> | compiler options to build your application. Enter           |
> |                                                             |
> |     nc-config --help                                        |
> |
> then I issued
> 
> make check install and got the errors
> then got bunch of errors like
> 
> til.o: In function `internal_max_':
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1358: undefined reference 
> to `max_double_'
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1351: undefined reference 
> to `max_float_'
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1321: undefined reference 
> to `max_schar_'
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1334: undefined reference 
> to `max_short_'
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1344: undefined reference 
> to `max_int_'
> util.o: In function `internal_min_':
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1255: undefined reference 
> to `min_schar_'
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1268: undefined reference 
> to `min_short_'
> /home/ammar/F90Netcdf/netcdf-4.1.2/nf_test/util.F:1278: undefined reference 
> to `min_int_'
> collect2: ld returned 1 exit status
> make[2]: *** [nf_test] Error 1
> make[2]: Leaving directory `/home/ammar/F90Netcdf/netcdf-4.1.2/nf_test'
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory `/home/ammar/F90Netcdf/netcdf-4.1.2/nf_test'
> make: *** [check-recursive] Error 1
> [root@landau netcdf-4.1.2]#
> 
> I am trying to install this on linux 64 bit machine running redhat.

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: ORW-515290
Department: Support netCDF
Priority: High
Status: Closed