[netCDF #HAD-852299]: Error with installation of netcdf-4.1.3 in ubuntu 11.0-64bit machine

Can you try sourcing the following:

source /opt/intel/composer_xe_2011_sp1.7.256/compiler/bin/ifortvars.sh intel64
source /opt/intel/composer_xe_2011_sp1.7.256/compiler/bin/iccvars.sh intel64

and then send me the output of the env command? Also, are you using the bash 
shell, or a C shell like csh or tcsh? If it's a C shell, you should use 
ifortvars.csh and iccvars.csh instead of the .sh versions.

Cheers!

Sean

> helo
> yahh I typed the  command "locate libimf.so" it shows
> 
> dipak@ubuntu11:~$ locate libimf.so
> /opt/intel/composer_xe_2011_sp1.7.256/compiler/lib/ia32/libimf.so
> /opt/intel/composer_xe_2011_sp1.7.256/compiler/lib/intel64/libimf.so
> 
> 
> address@hidden> wrote:
> 
> > Greetings!
> >
> > Can you verify that libimf.so is on your system? Try the following command
> > (or use the gnome search tool):
> >
> > locate libimf.so
> >
> > Cheers!
> >
> > Sean
> >
> > > Dear Sir I ran the command "make distclean" inside the directory
> > > "/netcdf-4.1.3" first and then tried to rebuild the Netcdf-4.1.3, still
> > it
> > > is giving the error like below
> > >
> > > libtool: link: /opt/intel/bin/icc -g -O2 -o .libs/tst_rename tst_rename.o
> > > ../liblib/.libs/libnetcdf.so -lm -Wl,-rpath
> > -Wl,/home/dipak/NETCDF-4.1.3/lib
> > > ld: warning: libimf.so, needed by ../liblib/.libs/libnetcdf.so, not found
> > > (try using -rpath or -rpath-link)
> > > ld: warning: libsvml.so, needed by ../liblib/.libs/libnetcdf.so, not
> > found
> > > (try using -rpath or -rpath-link)
> > > ld: warning: libintlc.so.5, needed by ../liblib/.libs/libnetcdf.so, not
> > > found (try using -rpath or -rpath-link)
> > > make[2]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > make  check-TESTS
> > > make[2]: Entering directory `/home/dipak/netcdf-4.1.3/nctest'
> > > /home/dipak/netcdf-4.1.3/nctest/.libs/lt-nctest: error while loading
> > shared
> > > libraries: libimf.so: cannot open shared object file: No such file or
> > > directory
> > > FAIL: nctest
> > > /home/dipak/netcdf-4.1.3/nctest/.libs/lt-tst_rename: error while loading
> > > shared libraries: libimf.so: cannot open shared object file: No such file
> > > or directory
> > > FAIL: tst_rename
> > > cmp: nctest_classic.nc: No such file or directory
> > > FAIL: compare_test_files.sh
> > > ================================================
> > > 3 of 3 tests failed
> > > Please report to address@hidden
> > > ================================================
> > > make[2]: *** [check-TESTS] Error 1
> > > make[2]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > make[1]: *** [check-am] Error 2
> > > make[1]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > make: *** [check-recursive] Error 1
> > > dipak@ubuntu11:~/netcdf-4.1.3$
> > >
> > > thanks and regards
> > > Dipak sahu
> > >
> > >
> > > address@hidden> wrote:
> > >
> > > > Greetings!
> > > >
> > > > Did you run
> > > >
> > > > make distclean
> > > >
> > > > before you tried to rebuild?
> > > >
> > > > Sean
> > > >
> > > > > Dear sir
> > > > > >  I tried the below command command and try to install after that
> > still
> > > > it
> > > > > > is giving the following errors
> > > > > >
> > > > >
> > > > > $source /opt/intel/bin/ifortvars.sh intel64
> > > > > $source /opt/intel/bin/iccvars.sh intel64
> > > > >
> > > > >
> > > > >
> > > > > >   /opt/intel/bin/icc -DHAVE_CONFIG_H -I. -I.. -I../fortran
> > > > > > -I../include     -g -O2 -MT                       tst_rename.o -MD
> > -MP
> > > > -MF
> > > > > > $depbase.Tpo -c -o tst_rename.o tst_rename.c &&\
> > > > > >         mv -f $depbase.Tpo $depbase.Po
> > > > > >
> > > > > > /bin/bash ../libtool --tag=CC   --mode=link /opt/intel/bin/icc  -g
> > -O2
> > > > > > ../liblib/libnetcdf.la                        -o tst_rename
> > > > tst_rename.o
> > > > > > -lm
> > > > > > libtool: link: /opt/intel/bin/icc -g -O2 -o .libs/tst_rename
> > > > tst_rename.o
> > > > > > ../liblib/.libs/lib                      netcdf.so -lm -Wl,-rpath
> > > > > > -Wl,/home/dipak/NETCDF-4.1.3/lib
> > > > > >
> > > > > > ld: warning: libimf.so, needed by ../liblib/.libs/libnetcdf.so, not
> > > > found
> > > > > > (try using -rpath or                       -rpath-link)
> > > > > > ld: warning: libsvml.so, needed by ../liblib/.libs/libnetcdf.so,
> > not
> > > > found
> > > > > > (try using -rpath o                      r -rpath-link)
> > > > > > ld: warning: libintlc.so.5, needed by
> > ../liblib/.libs/libnetcdf.so, not
> > > > > > found (try using -rpat                      h or -rpath-link)
> > > > > >
> > > > > > make[2]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > > make  check-TESTS
> > > > > > make[2]: Entering directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > > /home/dipak/netcdf-4.1.3/nctest/.libs/lt-nctest: error while
> > loading
> > > > > > shared libraries: libimf.                      so: cannot open
> > shared
> > > > > > object file: No such file or directory
> > > > > > FAIL: nctest
> > > > > > /home/dipak/netcdf-4.1.3/nctest/.libs/lt-tst_rename: error while
> > > > loading
> > > > > > shared libraries: lib                      imf.so: cannot open
> > shared
> > > > > > object file: No such file or directory
> > > > > >
> > > > > > FAIL: tst_rename
> > > > > > cmp: nctest_classic.nc: No such file or directory
> > > > > > FAIL: compare_test_files.sh
> > > > > > ================================================
> > > > > > 3 of 3 tests failed
> > > > > > Please report to address@hidden
> > > > > > ================================================
> > > > > > make[2]: *** [check-TESTS] Error 1
> > > > > > make[2]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > > make[1]: *** [check-am] Error 2
> > > > > > make[1]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > > make: *** [check-recursive] Error 1
> > > > > > dipak@ubuntu11:~/netcdf-4.1.3$
> > > > > >
> > > > > >
> > > > > > Kindly help me in thsi regards, how to solve this error.
> > > > > >
> > > > > > thanks and regards
> > > > > >
> > > > > > Dipak kumar Sahu
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > address@hidden> wrote:
> > > > > >
> > > > > >> Greetings!
> > > > > >>
> > > > > >> The error indicates that netCDF is having a problem finding your
> > Intel
> > > > > >> libraries. Did you source the Intel environmental variable setup
> > > > scripts
> > > > > >> for icc and ifort? If not, use the following command as a guide to
> > > > find the
> > > > > >> proper scripts on your system:
> > > > > >>
> > > > > >> source <location of Intel compiler>/bin/ifortvars.sh intel64
> > > > > >> source <location of Intel compiler>/bin/iccvars.sh intel64
> > > > > >>
> > > > > >> Cheers,
> > > > > >>
> > > > > >> Sean
> > > > > >>
> > > > > >> > Dear sir
> > > > > >> >
> > > > > >> > I am getting the following error while tring to instal
> > netcdf-4.1.3
> > > > > >> > without HDF5 by using the following command
> > > > > >> >
> > > > > >> > ./configure --prefix=/home/dipak --disable-netcdf-4 make check
> > > > install
> > > > > >> >
> > > > > >> > The errors are like below
> > > > > >> >
> > > > > >> > /bin/bash ../libtool --tag=CC   --mode=link /opt/intel/bin/icc
> >  -g
> > > > -O2
> > > > > >> > ../liblib/libnetcdf.la  -o tst_rename tst_rename.o  -lm
> > > > > >> >
> > > > > >> > libtool: link: /opt/intel/bin/icc -g -O2 -o .libs/tst_rename
> > > > > >> > tst_rename.o  ../liblib/.libs/libnetcdf.so
> > > > > >> > -lm -Wl,-rpath -Wl,//home/dipak/lib
> > > > > >> >
> > > > > >> > ld: warning: libimf.so, needed by ../liblib/.libs/libnetcdf.so,
> > not
> > > > > >> found
> > > > > >> > (try using -rpath or -rpath-link)
> > > > > >> >
> > > > > >> > ld: warning: libsvml.so, needed by
> > ../liblib/.libs/libnetcdf.so, not
> > > > > >> found
> > > > > >> > (try using -rpath or -rpath-link)
> > > > > >> >
> > > > > >> > ld: warning: libintlc.so.5, needed by
> > ../liblib/.libs/libnetcdf.so,
> > > > not
> > > > > >> > found (try using -rpath or -rpath-link)
> > > > > >> >
> > > > > >> > make[2]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > >> >
> > > > > >> > make  check-TESTS
> > > > > >> >
> > > > > >> > make[2]: Entering directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > >> >
> > > > > >> > /home/dipak/netcdf-4.1.3/nctest/.libs/lt-nctest: error while
> > loading
> > > > > >> shared
> > > > > >> > libraries: libimf.so: cannot open shared object file: No such
> > file
> > > > or
> > > > > >> > directory
> > > > > >> >
> > > > > >> > FAIL: nctest
> > > > > >> >
> > > > > >> > /home/dipak/netcdf-4.1.3/nctest/.libs/lt-tst_rename: error while
> > > > loading
> > > > > >> > shared libraries: libimf.so: cannot open shared object file: No
> > such
> > > > > >> file
> > > > > >> > or directory
> > > > > >> >
> > > > > >> > FAIL: tst_rename
> > > > > >> >
> > > > > >> > cmp: nctest_classic.nc: No such file or directory
> > > > > >> >
> > > > > >> > FAIL: compare_test_files.sh
> > > > > >> >
> > > > > >> > ================================================
> > > > > >> >
> > > > > >> > 3 of 3 tests failed
> > > > > >> >
> > > > > >> > Please report to address@hidden
> > > > > >> >
> > > > > >> > ================================================
> > > > > >> >
> > > > > >> > make[2]: *** [check-TESTS] Error 1
> > > > > >> >
> > > > > >> > make[2]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > >> >
> > > > > >> > make[1]: *** [check-am] Error 2
> > > > > >> >
> > > > > >> > make[1]: Leaving directory `/home/dipak/netcdf-4.1.3/nctest'
> > > > > >> >
> > > > > >> > make: *** [check-recursive] Error 1
> > > > > >> >
> > > > > >> > dipak@ubuntu11:~/netcdf-4.1.3$
> > > > > >> >
> > > > > >> > waiting for your kind reply
> > > > > >> > thanks and regards
> > > > > >> >
> > > > > >> > Dipak sahu
> > > > > >> >
> > > > > >> >
> > > > > >> > --
> > > > > >> > ********************************************
> > > > > >> > Dipak kumar Sahu,
> > > > > >> > Research Scholar,
> > > > > >> > Centre for Atmospheric Sciences.,
> > > > > >> > Indian Institute of Technology,Delhi
> > > > > >> > email:- address@hidden
> > > > > >> > **********************************************
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >> Ticket Details
> > > > > >> ===================
> > > > > >> Ticket ID: HAD-852299
> > > > > >> Department: Support netCDF
> > > > > >> Priority: Normal
> > > > > >> Status: Open
> > > > > >>
> > > > > >>
> > > > > >
> > > > > >
> > > > > > --
> > > > > > ********************************************
> > > > > > Dipak kumar Sahu,
> > > > > > Research Scholar,
> > > > > > Centre for Atmospheric Sciences.,
> > > > > > Indian Institute of Technology,Delhi
> > > > > > email:- address@hidden
> > > > > > **********************************************
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > > --
> > > > > ********************************************
> > > > > Dipak kumar Sahu,
> > > > > Research Scholar,
> > > > > Centre for Atmospheric Sciences.,
> > > > > Indian Institute of Technology,Delhi
> > > > > email:- address@hidden
> > > > > **********************************************
> > > > >
> > > > >
> > > >
> > > >
> > > > Ticket Details
> > > > ===================
> > > > Ticket ID: HAD-852299
> > > > Department: Support netCDF
> > > > Priority: Normal
> > > > Status: Open
> > > >
> > > >
> > >
> > >
> > > --
> > > ********************************************
> > > Dipak kumar Sahu,
> > > Research Scholar,
> > > Centre for Atmospheric Sciences.,
> > > Indian Institute of Technology,Delhi
> > > email:- address@hidden
> > > **********************************************
> > >
> > >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: HAD-852299
> > Department: Support netCDF
> > Priority: Normal
> > Status: Open
> >
> >
> 
> 
> --
> ********************************************
> Dipak kumar Sahu,
> Research Scholar,
> Centre for Atmospheric Sciences.,
> Indian Institute of Technology,Delhi
> email:- address@hidden
> **********************************************
> 
> 


Ticket Details
===================
Ticket ID: HAD-852299
Department: Support netCDF
Priority: Normal
Status: Open