[netCDF #PVE-576912]: Unable to compile netcdf

Greetings!

> Hi Sean,
> 
> Thank you very much indeed for your help and support in netcdf and
> read_wrf_nc compilation. Although NETCDF is compiled successfully as
> indicated in the logfiles that I emailed you, however, there are still
> some 'alarms' in the config.log such as the ones copied below(after
> signature lines). Most of these error messages are coming from conftest.F
> and conftest.c. I am just wondering, if these errors could affect
> compilation and/or netcdf performance or I can just ignore them.
> 
> Regarding read_wrf_nc, the utilitly is compiled successfully but with a
> warning message i.e.
> 
> $ifort read_wrf_nc.f -L/home/khanb/temp/lib -lnetcdff -lnetcdf -lm
> -I/home/khanb/temp/include -FR -o read_wrf_nc <enter>
> /mnt/kaustapps/INTEL/v11.1.app/ifort/11.1/lib/intel64/libimf.so: warning:
> warning: feupdateenv is not implemented and will always fail
> [1]+  Done                    nedit read_wrf_nc.f
> 
> read_wrf_nc is working fine with data extraction but it is unable to do
> any math calculation. On the internet I found that using -lmf flag might

Yes, adding that flag will work (-limf, not -lmf, right?). Make sure you add it 
to the -lm flag such that -limf is first (i.e. -limf -lm). Another thing you 
might try is to pass the option -shared-intel to ifort. Other that those two 
suggestions, I would say your best bet would be to contact the WRF users list 
(http://mailman.ucar.edu/mailman/listinfo/wrf-users), as someone working with 
WRF has probably dealt with this issue too.

Cheers!

Sean

> help, I used it, and the warning message was gone but still read_wrf_nc is
> unable to calculate diagnostic variables. I know it is not related to
> netcdf and I should not ask you this question but just thought you might
> be able to put me into the right direction.
> 
> 
> 
> Thanks again and have a great day.
> 
> ---
> Basit A. Khan, Ph.D.
> Postdoctoral Fellow
> Division of Physical Sciences & Engineering
> Office# 3204, Level 3, Building 1,
> King Abdullah University of Science & Technology
> 4700 King Abdullah Blvd, Box 2753, Thuwal 23955 ­6900,
> Kingdom of Saudi Arabia.
> 
> Office: +966(0)2 808 0276,  Mobile: +966(0)5 9538 7592
> E-mail: address@hidden
> Skype name: basit.a.khan
> 
> --------------------------------------------
> 
> Errors in the ./configure run (config.log)
> icc: command line warning #10006: ignoring unknown option '-qversion'
> icc: command line error: no files specified; for help type "icc -help"
> conftest.c(29): error: identifier "CURLOPT_KEYPASSWD" is undefined
> 
> conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when
> expecting one of: ( % : . = =>
> choke me
> conftest.F(3): error #6218: This statement is positioned incorrectly
> and/or has syntax errors.
> choke me
> icpc: command line warning #10006: ignoring unknown option '-qversion'
> icpc: command line error: no files specified; for help type "icpc -help"
> 
> conftest.c(25): error #5: could not open source file "ac_nonexistent.h"
> #include <ac_nonexistent.h>
> 
> conftest.c(103): error: expected an expression
> if (sizeof ((_Bool)))
> ^
> /* Override any GCC internal prototype to avoid an error.
> | Use char because int might match the return type of a GCC
> | builtin and then its argument prototype would still apply. */
> 
> conftest.c(130): error: identifier "uchar" is undefined
> 
> 
> syntax error, unexpected SCAN_WORD, expecting SCAN_ATTR or SCAN_DATASET or
> SCAN_ERROR
> 
> ---------------------------------------------------------------------------
> ---------------------
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> On 7/29/11 7:44 PM, "Unidata netCDF Support"
> <address@hidden> wrote:
> 
> >Greetings,
> >
> >Great news that the errors disappeared on the netCDF build. If you look
> >at the current errors related to undefined reference, nearly all of those
> >symbols start with nf_, which indicates the compiler is unable to find
> >the fortran libs. To make sure the fortran libs get included, you will
> >need to update your -L flag to:
> >
> >--L/home/khanb/temp/lib -lnetcdff -lnetcdf  ----> notice the extra 'f' on
> >-libnetcdff
> >
> >One nice tool that comes with the netCDF package is nc-config. nc-config
> >will tell you a lot of information regarding how netCDF was built, as
> >well as what flags you should use when trying to link to and use to
> >netCDF. For example, to see what fortran flags you will need to use, try:
> >
> >nc-config --fflags
> >
> >and for what to use to like to the library:
> >
> >nc-config --flibs
> >
> >You could also do an nc-config --all to see all the info on your netCDF
> >install.
> >
> >Let me know if updating your -L flag works.
> >
> >Cheers!
> >
> >Sean
> >
> >> Hi Sean,
> >>
> >> Thank you very much for a very prompt, clear and compact response. I
> >>tried
> >> to compile netcdf again with your suggested changes and got rid of
> >> previous errors, that I have copied in my first email, however I got
> >>some
> >> new errors in the configure run. I am attaching the four log files
> >> config.log,  make.log, makecheck.log and makeinstall.log for your
> >>review.
> >> Following are my environment and compiler setting for this particular
> >> compilation effort. I don't want hdf5 support so I excluded hdf5,
> >>however,
> >> I included zlib just incase netcdf needs that.
> >>
> >> -bash-3.2$ make clean
> >>
> >> -bash-3.2$ source
> >>
> >>/mnt/kaustapps/INTEL/v11.1.app/ifort/11.1/bin/intel64/ifortvars_intel64.s
> >>h
> >> -bash-3.2$ source
> >> /mnt/kaustapps/INTEL/v11.1.app/icc/11.1/bin/intel64/iccvars_intel64.sh
> >> -bash-3.2$ export CPPFLAGS=-I/home/khanb/zlib/include
> >> -bash-3.2$ export LDFLAGS=-L/home/khanb/zlib/lib
> >> -bash-3.2$ export CC=icc
> >> -bash-3.2$ export CXX=icpc
> >> -bash-3.2$ export FC=ifort
> >> -bash-3.2$ export CPPFLAGS=-I/home/khanb/zlib/include
> >> -bash-3.2$ export LDFLAGS=-L/home/khanb/zlib/lib
> >> -bash-3.2$ export CC=icc
> >> -bash-3.2$ export CXX=icpc
> >> -bash-3.2$ export FC=ifort
> >> -bash-3.2$ ./configure --prefix=/home/khanb/temp --disable-netcdf-f
> >> -bash-3.2$ make >& make.log
> >> -bash-3.2$ make check >& makecheck.log
> >> -bash-3.2$ make install >& makeinstall.log
> >>
> >>
> >>
> >>
> >> After completing the compiling process I got netcdf files in the lib,
> >> include and bin directory. To try my luck, I tried to compile a small
> >>wrf
> >> utility 'read_wrf_nc.f' and got the following errors.
> >>
> >>
> >>
> >> -bash-3.2$ ifort read_wrf_nc.f -L/home/khanb/temp/lib -lnetcdf -lm
> >> -I/home/khanb/temp/include -FR -o read_wrf_nc
> >> /mnt/kaustapps/INTEL/v11.1.app/ifort/11.1/lib/intel64/libimf.so:
> >>warning:
> >> warning: feupdateenv is not implemented and will always fail
> >> /tmp/ifort4jX8UR.o: In function `get_info_from_cdf_':
> >> read_wrf_nc.f:(.text+0x4332): undefined reference to `nf_open_'
> >> read_wrf_nc.f:(.text+0x43e7): undefined reference to `nf_inq_varid_'
> >> read_wrf_nc.f:(.text+0x4429): undefined reference to `ncvid_'
> >> read_wrf_nc.f:(.text+0x446a): undefined reference to `nf_inq_var_'
> >> read_wrf_nc.f:(.text+0x44b7): undefined reference to `nf_inq_dimlen_'
> >> read_wrf_nc.f:(.text+0x455a): undefined reference to `nf_get_vara_text_'
> >> read_wrf_nc.f:(.text+0x45e1): undefined reference to `nf_inq_'
> >> read_wrf_nc.f:(.text+0x465a): undefined reference to `nf_inq_dim_'
> >> read_wrf_nc.f:(.text+0x4808): undefined reference to `nf_inq_attname_'
> >> read_wrf_nc.f:(.text+0x483c): undefined reference to `nf_inq_att_'
> >> read_wrf_nc.f:(.text+0x4889): undefined reference to `nf_get_att_int_'
> >> read_wrf_nc.f:(.text+0x49bb): undefined reference to `nf_get_att_real_'
> >> read_wrf_nc.f:(.text+0x4af8): undefined reference to `nf_get_att_text_'
> >> read_wrf_nc.f:(.text+0x4ce5): undefined reference to `nf_get_att_int_'
> >>
> >> I will greatly appreciate if you could review the logfiles and suggest
> >> some remedy.
> >>
> >> Thanks and best regards,
> >> ---
> >>
> >>
> >> Basit A. Khan, Ph.D.
> >> Postdoctoral Fellow
> >> Division of Physical Sciences & Engineering
> >> Office# 3204, Level 3, Building 1,
> >> 4700 King Abdullah University of Science & Technology
> >> Thuwal 23955 ­6900
> >>
> >> Office: +966(0)2 808 0276
> >> Cell    : +966(0)5 9538 7592
> >> Skype name: basit.a.khan
> >>
> >>
> >>
> >>
> >> On 7/27/11 8:13 PM, "Unidata netCDF Support"
> >> <address@hidden> wrote:
> >>
> >> >Greetings!
> >> >
> >> >Sorry for the duplicate message - I forgot to cc the rest of the netCDF
> >> >team. Please reply to this email, not the previous one. The issue, from
> >> >what I can tell, is that the netCDF FORTRAN libs were not built
> >> >correctly. Have you sourced the Intel environmental scripts before
> >> >building? Let's try the following (I'm assuming a bash shell - you will
> >> >need to tweak this for a c-based shell, like csh):
> >> >
> >> >Open a fresh terminal without setting any of the variables you set in
> >> >your first email. Go to your netCDF build directory and do:
> >> >
> >> >make clean
> >> >
> >> >Then, use the Intel scripts to setup your base environment (it will
> >>look
> >> >something like this):
> >> >
> >> >source <install-dir>/bin/ifortvars.sh intel64
> >> >source <install-dir>/bin/iccvars.sh
> >> >
> >> >(where <install-dir> is the installation directory of your intel
> >> >compilers)
> >> >
> >> >You may keep the compiler variables, so export those if you'd like (CC,
> >> >FC, CXX - you don't need to set FF or F90)
> >> >
> >> >Set the following environmental variables to include the paths for any
> >> >extra libraries you will need (i.e. hdf5, zlib, etc. - it depends on
> >>what
> >> >you did during configure):
> >> >
> >> >export CPPFLAGS=-I/path/to/include *Note the exclusion of
> >>'-DpgiFortran'
> >> >export LDFLAGS=-L/path/to/lib
> >> >
> >> >For now, let's try to not set any of the compiler flags (CFLAGS,
> >> >CXXFLAGS, FCFLAGS, etc) - we can try that next if we can get it to work
> >> >without them.
> >> >
> >> >Now, try doing running the configure script, followed by make, and if
> >> >successful, make check. If things do not work, please send the logs
> >>from
> >> >your configure, make, and make check output.
> >> >
> >> >Cheers!
> >> >
> >> >Sean
> >> >
> >> >> Hi there,
> >> >>
> >> >> I am trying to compile netcdf 4.1.3 on my  LINUX RED HAT Enterprise
> >>5.4
> >> >> x86_64 GNU with Intel compilers icc 11.1,  ifort 11.1 and openmpi
> >>1.4.2.
> >> >> I have tried almost every possible combination of compiler options
> >>from
> >> >> internet and your website   that could possibly be used for LINUX
> >>system
> >> >> with intel compilers but nothing worked for my case. Most of the time
> >> >> I get the errors (listed after the signature lines)  when I run
> >>'make
> >> >> check'. Unfortunately my IT support people  have no idea whatsoever
> >>as
> >> >> what this problem is all about. So, with my very limited knowledge of
> >> >> linux and compilers, I am trying to get my head around this problem.
> >>I
> >> >> am using the following environment variable setting to compile netcdf
> >> >> libraries. The error list copied after the signature came from this
> >> >> setting. I will greatly appreciate if you could have a look of the
> >> >> error messages and flag setting and suggest the correct configuration
> >> >> to compile netcdf for my system.
> >> >>
> >> >> $ export CC=icc
> >> >> $ export CXX=icpc
> >> >> $ export CFLAGS='-O3 -xssse3 -ip -no-prec-div -static'
> >> >> $ export CXXFLAGS='-O3 -xssse3 -ip -no-prec-div -static'
> >> >> $ export F77=ifort
> >> >> $ export FC=ifort
> >> >> $ export F90=ifort
> >> >> $ export FFLAGS='-O3 -xssse3 -ip -no-prec-div -static'
> >> >> $ export CPP='icc -E'
> >> >> $ export CXXCPP='icpc ­E'
> >> >> $ export CPPFLAGS='-DpgiFortran'
> >> >>
> >> >>
> >> >> Thanks and best regards
> >> >>
> >> >> ---
> >> >> Basit A. Khan, Ph.D.
> >> >> Postdoctoral Fellow
> >> >> Division of Physical Sciences & Engineering
> >> >> Office# 3204, Level 3, Building 1,
> >> >> 4700 King Abdullah University of Science & Technology
> >> >> Thuwal 23955 ­6900
> >> >>
> >> >> Office: +966(0)2 808 0276
> >> >> Cell    : +966(0)5 9538 7592
> >> >> Skype name: basit.a.khan
> >> >>
> >> >>
> >> >> /bin/sh ../libtool --tag=F77   --mode=link ifort -I../fortran
> >> >>-I../include   -I../f90 -O3 -xssse3 -ip -no-prec-div -static   -o
> >> >>nf_test test_get.o test_put.o nf_error.o nf_test.o test_read.o
> >> >>test_write.o util.o fortlib.o ../fortran/libnetcdff.la  -lm
> >> >> libtool: link: ifort -I../fortran -I../include -I../f90 -O3 -xssse3
> >>-ip
> >> >>-no-prec-div -o nf_test test_get.o test_put.o nf_error.o nf_test.o
> >> >>test_read.o test_write.o util.o fortlib.o
> >>../fortran/.libs/libnetcdff.a
> >> >>-lm
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_put_att_text_':
> >> >> fort-attio.c:(.text+0x70): undefined reference to `nc_put_att_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_get_att_text_':
> >> >> fort-attio.c:(.text+0x178): undefined reference to `nc_get_att_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_put_att_int1_':
> >> >> fort-attio.c:(.text+0x28f): undefined reference to `nc_put_att_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_get_att_int1_':
> >> >> fort-attio.c:(.text+0x398): undefined reference to `nc_get_att_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_put_att_int2_':
> >> >> fort-attio.c:(.text+0x4af): undefined reference to `nc_put_att_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_get_att_int2_':
> >> >> fort-attio.c:(.text+0x5b8): undefined reference to `nc_get_att_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_put_att_int_':
> >> >> fort-attio.c:(.text+0x6cf): undefined reference to `nc_put_att_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_get_att_int_':
> >> >> fort-attio.c:(.text+0x7d8): undefined reference to `nc_get_att_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_put_att_real_':
> >> >> fort-attio.c:(.text+0x8ef): undefined reference to `nc_put_att_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_get_att_real_':
> >> >> fort-attio.c:(.text+0x9f8): undefined reference to `nc_get_att_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_put_att_double_':
> >> >> fort-attio.c:(.text+0xb0f): undefined reference to
> >>`nc_put_att_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-attio.o): In function
> >> >>`nf_get_att_double_':
> >> >> fort-attio.c:(.text+0xc18): undefined reference to
> >>`nc_get_att_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_create_':
> >> >> fort-control.c:(.text+0x69): undefined reference to `nc_create'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf__create_':
> >> >> fort-control.c:(.text+0x194): undefined reference to `nc__create'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_open_':
> >> >> fort-control.c:(.text+0x2a9): undefined reference to `nc_open'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf__open_':
> >> >> fort-control.c:(.text+0x3c3): undefined reference to `nc__open'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf_set_fill_':
> >> >> fort-control.c:(.text+0x481): undefined reference to `nc_set_fill'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_redef_':
> >> >> fort-control.c:(.text+0x494): undefined reference to `nc_redef'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_enddef_':
> >> >> fort-control.c:(.text+0x4a4): undefined reference to `nc_enddef'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf__enddef_':
> >> >> fort-control.c:(.text+0x4c0): undefined reference to `nc__enddef'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_sync_':
> >> >> fort-control.c:(.text+0x4d4): undefined reference to `nc_sync'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_close_':
> >> >> fort-control.c:(.text+0x4e4): undefined reference to `nc_close'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_delete_':
> >> >> fort-control.c:(.text+0x548): undefined reference to `nc_delete'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf__create_mp_':
> >> >> fort-control.c:(.text+0x66a): undefined reference to `nc__create_mp'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf__open_mp_':
> >> >> fort-control.c:(.text+0x7a4): undefined reference to `nc__open_mp'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf_delete_mp_':
> >> >> fort-control.c:(.text+0x8af): undefined reference to `nc_delete_mp'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf_set_base_pe_':
> >> >> fort-control.c:(.text+0x956): undefined reference to `nc_set_base_pe'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf_inq_base_pe_':
> >> >> fort-control.c:(.text+0x96f): undefined reference to `nc_inq_base_pe'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >>`nf_abort_':
> >> >> fort-control.c:(.text+0x984): undefined reference to `nc_abort'
> >> >> ../fortran/.libs/libnetcdff.a(fort-control.o): In function
> >> >>`nf_set_default_format_':
> >> >> fort-control.c:(.text+0x99f): undefined reference to
> >> >>`nc_set_default_format'
> >> >> ../fortran/.libs/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
> >> >> fort-dim.c:(.text+0x6e): undefined reference to `nc_def_dim'
> >> >> ../fortran/.libs/libnetcdff.a(fort-dim.o): In function
> >>`nf_inq_dimid_':
> >> >> fort-dim.c:(.text+0x190): undefined reference to `nc_inq_dimid'
> >> >> ../fortran/.libs/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
> >> >> fort-dim.c:(.text+0x2d3): undefined reference to `nc_inq_dim'
> >> >> ../fortran/.libs/libnetcdff.a(fort-dim.o): In function
> >> >>`nf_inq_dimname_':
> >> >> fort-dim.c:(.text+0x42b): undefined reference to `nc_inq_dimname'
> >> >> ../fortran/.libs/libnetcdff.a(fort-dim.o): In function
> >>`nf_inq_dimlen_':
> >> >> fort-dim.c:(.text+0x504): undefined reference to `nc_inq_dimlen'
> >> >> ../fortran/.libs/libnetcdff.a(fort-dim.o): In function
> >>`nf_rename_dim_':
> >> >> fort-dim.c:(.text+0x58a): undefined reference to `nc_rename_dim'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >>`nf_inq_att_':
> >> >> fort-genatt.c:(.text+0x7f): undefined reference to `nc_inq_att'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >> >>`nf_inq_attid_':
> >> >> fort-genatt.c:(.text+0x199): undefined reference to `nc_inq_attid'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >> >>`nf_inq_atttype_':
> >> >> fort-genatt.c:(.text+0x2a9): undefined reference to `nc_inq_atttype'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >> >>`nf_inq_attlen_':
> >> >> fort-genatt.c:(.text+0x3b9): undefined reference to `nc_inq_attlen'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >> >>`nf_inq_attname_':
> >> >> fort-genatt.c:(.text+0x4f6): undefined reference to `nc_inq_attname'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >> >>`nf_copy_att_':
> >> >> fort-genatt.c:(.text+0x62f): undefined reference to `nc_copy_att'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >> >>`nf_rename_att_':
> >> >> fort-genatt.c:(.text+0x79a): undefined reference to `nc_rename_att'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genatt.o): In function
> >>`nf_del_att_':
> >> >> fort-genatt.c:(.text+0x92a): undefined reference to `nc_del_att'
> >> >> ../fortran/.libs/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
> >> >> fort-geninq.c:(.text+0x35): undefined reference to `nc_inq'
> >> >> ../fortran/.libs/libnetcdff.a(fort-geninq.o): In function
> >> >>`nf_inq_ndims_':
> >> >> fort-geninq.c:(.text+0x7f): undefined reference to `nc_inq_ndims'
> >> >> ../fortran/.libs/libnetcdff.a(fort-geninq.o): In function
> >> >>`nf_inq_nvars_':
> >> >> fort-geninq.c:(.text+0x9f): undefined reference to `nc_inq_nvars'
> >> >> ../fortran/.libs/libnetcdff.a(fort-geninq.o): In function
> >> >>`nf_inq_natts_':
> >> >> fort-geninq.c:(.text+0xbf): undefined reference to `nc_inq_natts'
> >> >> ../fortran/.libs/libnetcdff.a(fort-geninq.o): In function
> >> >>`nf_inq_unlimdim_':
> >> >> fort-geninq.c:(.text+0xe6): undefined reference to `nc_inq_unlimdim'
> >> >> ../fortran/.libs/libnetcdff.a(fort-geninq.o): In function
> >> >>`nf_inq_format_':
> >> >> fort-geninq.c:(.text+0x10f): undefined reference to `nc_inq_format'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >>`nf_def_var_':
> >> >> fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >>`nf_inq_var_':
> >> >> fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_inq_varid_':
> >> >> fort-genvar.c:(.text+0x399): undefined reference to `nc_inq_varid'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_inq_varname_':
> >> >> fort-genvar.c:(.text+0x4cb): undefined reference to `nc_inq_varname'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_inq_vartype_':
> >> >> fort-genvar.c:(.text+0x5a4): undefined reference to `nc_inq_vartype'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_inq_varndims_':
> >> >> fort-genvar.c:(.text+0x5d4): undefined reference to `nc_inq_varndims'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_inq_vardimid_':
> >> >> fort-genvar.c:(.text+0x614): undefined reference to `nc_inq_vardimid'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_inq_varnatts_':
> >> >> fort-genvar.c:(.text+0x654): undefined reference to `nc_inq_varnatts'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_rename_var_':
> >> >> fort-genvar.c:(.text+0x6da): undefined reference to `nc_rename_var'
> >> >> ../fortran/.libs/libnetcdff.a(fort-genvar.o): In function
> >> >>`nf_copy_var_':
> >> >> fort-genvar.c:(.text+0x78a): undefined reference to `nc_copy_var'
> >> >> ../fortran/.libs/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
> >> >> fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
> >> >> ../fortran/.libs/libnetcdff.a(fort-lib.o): In function
> >>`c2f_chunksizes':
> >> >> fort-lib.c:(.text+0x150): undefined reference to `nc_inq_varndims'
> >> >> ../fortran/.libs/libnetcdff.a(fort-lib.o): In function
> >>`f2c_chunksizes':
> >> >> fort-lib.c:(.text+0x1f0): undefined reference to `nc_inq_varndims'
> >> >> ../fortran/.libs/libnetcdff.a(fort-lib.o): In function `f2c_coords':
> >> >> fort-lib.c:(.text+0x290): undefined reference to `nc_inq_varndims'
> >> >> ../fortran/.libs/libnetcdff.a(fort-lib.o): In function `f2c_counts':
> >> >> fort-lib.c:(.text+0x330): undefined reference to `nc_inq_varndims'
> >> >> ../fortran/.libs/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0):
> >> >>more undefined references to `nc_inq_varndims' follow
> >> >> ../fortran/.libs/libnetcdff.a(fort-misc.o): In function
> >> >>`nf_inq_libvers_':
> >> >> fort-misc.c:(.text+0xd): undefined reference to `nc_inq_libvers'
> >> >> ../fortran/.libs/libnetcdff.a(fort-misc.o): In function
> >>`nf_strerror_':
> >> >> fort-misc.c:(.text+0x13f): undefined reference to `nc_strerror'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_put_var_text_':
> >> >> fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_get_var_text_':
> >> >> fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_put_var_int1_':
> >> >> fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_get_var_int1_':
> >> >> fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_put_var_int2_':
> >> >> fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_get_var_int2_':
> >> >> fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_put_var_int_':
> >> >> fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_get_var_int_':
> >> >> fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_put_var_real_':
> >> >> fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_get_var_real_':
> >> >> fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_put_var_double_':
> >> >> fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-vario.o): In function
> >> >>`nf_get_var_double_':
> >> >> fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_put_var1_text_':
> >> >> fort-var1io.c:(.text+0x37): undefined reference to `nc_put_var1_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_get_var1_text_':
> >> >> fort-var1io.c:(.text+0x87): undefined reference to `nc_get_var1_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_put_var1_int1_':
> >> >> fort-var1io.c:(.text+0xd7): undefined reference to
> >>`nc_put_var1_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_get_var1_int1_':
> >> >> fort-var1io.c:(.text+0x127): undefined reference to
> >>`nc_get_var1_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_put_var1_int2_':
> >> >> fort-var1io.c:(.text+0x177): undefined reference to
> >>`nc_put_var1_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_get_var1_int2_':
> >> >> fort-var1io.c:(.text+0x1c7): undefined reference to
> >>`nc_get_var1_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_put_var1_int_':
> >> >> fort-var1io.c:(.text+0x217): undefined reference to `nc_put_var1_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_get_var1_int_':
> >> >> fort-var1io.c:(.text+0x267): undefined reference to `nc_get_var1_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_put_var1_real_':
> >> >> fort-var1io.c:(.text+0x2b7): undefined reference to
> >>`nc_put_var1_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_get_var1_real_':
> >> >> fort-var1io.c:(.text+0x307): undefined reference to
> >>`nc_get_var1_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_put_var1_double_':
> >> >> fort-var1io.c:(.text+0x357): undefined reference to
> >>`nc_put_var1_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_get_var1_double_':
> >> >> fort-var1io.c:(.text+0x3a7): undefined reference to
> >>`nc_get_var1_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_put_var1_':
> >> >> fort-var1io.c:(.text+0x3f7): undefined reference to `nc_put_var1'
> >> >> ../fortran/.libs/libnetcdff.a(fort-var1io.o): In function
> >> >>`nf_get_var1_':
> >> >> fort-var1io.c:(.text+0x447): undefined reference to `nc_get_var1'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_put_vara_text_':
> >> >> fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_get_vara_text_':
> >> >> fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_put_vara_int1_':
> >> >> fort-varaio.c:(.text+0x13c): undefined reference to
> >>`nc_put_vara_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_get_vara_int1_':
> >> >> fort-varaio.c:(.text+0x1ac): undefined reference to
> >>`nc_get_vara_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_put_vara_int2_':
> >> >> fort-varaio.c:(.text+0x21c): undefined reference to
> >>`nc_put_vara_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_get_vara_int2_':
> >> >> fort-varaio.c:(.text+0x28c): undefined reference to
> >>`nc_get_vara_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_put_vara_int_':
> >> >> fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_get_vara_int_':
> >> >> fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_put_vara_real_':
> >> >> fort-varaio.c:(.text+0x3dc): undefined reference to
> >>`nc_put_vara_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_get_vara_real_':
> >> >> fort-varaio.c:(.text+0x44c): undefined reference to
> >>`nc_get_vara_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_put_vara_double_':
> >> >> fort-varaio.c:(.text+0x4bc): undefined reference to
> >>`nc_put_vara_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_get_vara_double_':
> >> >> fort-varaio.c:(.text+0x52c): undefined reference to
> >>`nc_get_vara_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_put_vara_':
> >> >> fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varaio.o): In function
> >> >>`nf_get_vara_':
> >> >> fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_put_varm_text_':
> >> >> fort-varmio.c:(.text+0xa9): undefined reference to `nc_put_varm_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_get_varm_text_':
> >> >> fort-varmio.c:(.text+0x169): undefined reference to
> >>`nc_get_varm_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_put_varm_int1_':
> >> >> fort-varmio.c:(.text+0x229): undefined reference to
> >>`nc_put_varm_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_get_varm_int1_':
> >> >> fort-varmio.c:(.text+0x2e9): undefined reference to
> >>`nc_get_varm_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_put_varm_int2_':
> >> >> fort-varmio.c:(.text+0x3a9): undefined reference to
> >>`nc_put_varm_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_get_varm_int2_':
> >> >> fort-varmio.c:(.text+0x469): undefined reference to
> >>`nc_get_varm_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_put_varm_int_':
> >> >> fort-varmio.c:(.text+0x529): undefined reference to `nc_put_varm_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_get_varm_int_':
> >> >> fort-varmio.c:(.text+0x5e9): undefined reference to `nc_get_varm_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_put_varm_real_':
> >> >> fort-varmio.c:(.text+0x6a9): undefined reference to
> >>`nc_put_varm_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_get_varm_real_':
> >> >> fort-varmio.c:(.text+0x769): undefined reference to
> >>`nc_get_varm_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_put_varm_double_':
> >> >> fort-varmio.c:(.text+0x829): undefined reference to
> >>`nc_put_varm_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varmio.o): In function
> >> >>`nf_get_varm_double_':
> >> >> fort-varmio.c:(.text+0x8e9): undefined reference to
> >>`nc_get_varm_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_put_vars_text_':
> >> >> fort-varsio.c:(.text+0x84): undefined reference to `nc_put_vars_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_get_vars_text_':
> >> >> fort-varsio.c:(.text+0x124): undefined reference to
> >>`nc_get_vars_text'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_put_vars_int1_':
> >> >> fort-varsio.c:(.text+0x1c4): undefined reference to
> >>`nc_put_vars_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_get_vars_int1_':
> >> >> fort-varsio.c:(.text+0x264): undefined reference to
> >>`nc_get_vars_schar'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_put_vars_int2_':
> >> >> fort-varsio.c:(.text+0x304): undefined reference to
> >>`nc_put_vars_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_get_vars_int2_':
> >> >> fort-varsio.c:(.text+0x3a4): undefined reference to
> >>`nc_get_vars_short'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_put_vars_int_':
> >> >> fort-varsio.c:(.text+0x444): undefined reference to `nc_put_vars_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_get_vars_int_':
> >> >> fort-varsio.c:(.text+0x4e4): undefined reference to `nc_get_vars_int'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_put_vars_real_':
> >> >> fort-varsio.c:(.text+0x584): undefined reference to
> >>`nc_put_vars_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_get_vars_real_':
> >> >> fort-varsio.c:(.text+0x624): undefined reference to
> >>`nc_get_vars_float'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_put_vars_double_':
> >> >> fort-varsio.c:(.text+0x6c4): undefined reference to
> >>`nc_put_vars_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_get_vars_double_':
> >> >> fort-varsio.c:(.text+0x764): undefined reference to
> >>`nc_get_vars_double'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_put_vars_':
> >> >> fort-varsio.c:(.text+0x804): undefined reference to `nc_put_vars'
> >> >> ../fortran/.libs/libnetcdff.a(fort-varsio.o): In function
> >> >>`nf_get_vars_':
> >> >> fort-varsio.c:(.text+0x8a4): undefined reference to `nc_get_vars'
> >> >> make[2]: *** [nf_test] Error 1
> >> >> make[2]: Leaving directory `/home/khanb/temp/netcdf-4.1.3/nf_test'
> >> >> make[1]: *** [check-am] Error 2
> >> >> make[1]: Leaving directory `/home/khanb/temp/netcdf-4.1.3/nf_test'
> >> >> make: *** [check-recursive] Error 1
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >> >
> >> >
> >> >Ticket Details
> >> >===================
> >> >Ticket ID: PVE-576912
> >> >Department: Support netCDF
> >> >Priority: Normal
> >> >Status: Open
> >> >
> >>
> >>
> >>
> >
> >
> >Ticket Details
> >===================
> >Ticket ID: PVE-576912
> >Department: Support netCDF
> >Priority: Normal
> >Status: Open
> >
> 
> 


Ticket Details
===================
Ticket ID: PVE-576912
Department: Support netCDF
Priority: Normal
Status: Open