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[netCDF #RPI-910358]: Installation problem on Mac Pro

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  • Subject: [netCDF #RPI-910358]: Installation problem on Mac Pro
  • Date: Tue, 07 Jun 2011 10:45:06 -0600
Greetings Li,

Would you please try the following:

make distclean

export FCFLAGS=-m64 (for bash; use `setenv` instead of `export` for csh)

export FFLAGS=$FCFLAGS

and then run your configure command:

./configure --prefix=/opt/ifort_libs/netcdf/4.1.2 
--with-hdf5=/opt/ifort_libs/hdf5/1.8.6 --enable-netcdf4 --enable-shared FC=ifort

followed by the `make` and `make check` commands. Let's see if that works.

Cheers!

Sean

> I only have <build dir>/fortran/.libs/libnetcdff.dylib, the output is:
> 
> fortran/.libs/libnetcdff.dylib: Mach-O 64-bit dynamically linked shared 
> library x86_64
> 
> For hdf5, there are:
> 
> ls /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5
> libhdf5.a             libhdf5_fortran.a     libhdf5_hl_cpp.la
> libhdf5.la            libhdf5_fortran.la    libhdf5hl_fortran.a
> libhdf5.settings      libhdf5_hl.a          libhdf5hl_fortran.la
> libhdf5_cpp.a         libhdf5_hl.la
> libhdf5_cpp.la        libhdf5_hl_cpp.a
> 
> and
> 
> file /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5.a
> /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5.a: current ar archive random library
> file /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5.la
> /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5.la: libtool library file
> 
> Cheers,
> 
> Li
> 
> On Jun 7, 2011, at 12:53 AM, Unidata netCDF Support wrote:
> 
> > Thanks for the logs, Li! Could you tell me the output from the following 
> > three commands:
> >
> > file /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5.dylib
> >
> > file <build dir>/fortran/.libs/libnetcdff.dylib
> >
> > file <build dir>/fortran/.libs/libnetcdf.dylib
> >
> > Thanks!
> >
> > Sean
> >
> >> Dear Sean,
> >>
> >> The logs are in the attachments.
> >>
> >> Cheers,
> >>
> >> Li
> >>
> >>
> >>
> >> On Jun 4, 2011, at 1:00 AM, Unidata netCDF Support wrote:
> >>
> >>> Greetings Li,
> >>>
> >>> Would you mind sending your config, make, and make check logs?
> >>>
> >>> Thanks!
> >>>
> >>> Sean Arms
> >>>
> >>>> Dear all,
> >>>>
> >>>> I am trying to install NETCDF 4.1.2 with netcdf4 into our Mac Pro. The 
> >>>> fortran compiler is intel 12.0.0. The configure is:
> >>>>
> >>>> ./configure --prefix=/opt/ifort_libs/netcdf/4.1.2 --enable-netcdf4 
> >>>> --with-hdf5=/opt/ifort_libs/hdf5/1.8.6/ FC=ifort
> >>>>
> >>>> When the "make" complete, I executed "make check". It complained:
> >>>>
> >>>> libtool: link: ifort -I../fortran -I../f90 -I../f90 -I../include 
> >>>> -I../liblib -I/opt/ifort_libs/hdf5/1.8.6//include -g -o 
> >>>> .libs/f90tst_vars f90tst_vars.o  -L/opt/ifort_libs/hdf5/1.8.6//lib 
> >>>> ../fortran/.libs/libnetcdff.dylib ../liblib/.libs/libnetcdf.dylib -lcurl 
> >>>> /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5_hl.dylib 
> >>>> /opt/ifort_libs/hdf5/1.8.6/lib/libhdf5.dylib -lm -lz
> >>>> ld: warning: -macosx_version_min not specificed, assuming 10.6
> >>>> Undefined symbols for architecture x86_64:
> >>>> "_netcdf_mp_nf90_create_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_def_dim_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_def_var_manydims_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_def_var_chunking_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_enddef_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_put_var_2d_fourbyteint_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_close_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_open_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_inquire_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_inq_var_chunking_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_get_var_2d_fourbyteint_", referenced from:
> >>>> _MAIN__ in f90tst_vars.o
> >>>> "_netcdf_mp_nf90_strerror_", referenced from:
> >>>> _f90tst_vars_IP_handle_err_ in f90tst_vars.o
> >>>> ld: symbol(s) not found for architecture x86_64
> >>>> make[2]: *** [f90tst_vars] Error 1
> >>>> make[1]: *** [check-am] Error 2
> >>>> make: *** [check-recursive] Error 1
> >>>>
> >>>> And I found that there is no f90 symbols in "libnetcdff.dylib" by 
> >>>> executing "nm fortran/.lib/libnetcdff.dylib", but in "libnetcdff.a" in 
> >>>> the same directory.
> >>>>
> >>>> Help, please!
> >>>>
> >>>> Best regards,
> >>>>
> >>>> Li
> >>>>
> >>>
> >>>
> >>> Ticket Details
> >>> ===================
> >>> Ticket ID: RPI-910358
> >>> Department: Support netCDF
> >>> Priority: Normal
> >>> Status: Open
> >>>
> >>
> >>
> >>
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: RPI-910358
> > Department: Support netCDF
> > Priority: Normal
> > Status: Open
> >
> 
> 
> 


Ticket Details
===================
Ticket ID: RPI-910358
Department: Support netCDF
Priority: Normal
Status: Open