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[netCDF #LEF-356666]: compiling parallel NetCDF problems

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  • Subject: [netCDF #LEF-356666]: compiling parallel NetCDF problems
  • Date: Fri, 03 Jun 2011 07:32:54 -0600
> Hi Ed
> 
> I still get an error. The problem is that during compilation 'libtool'
> looks in the install directory. Since installation has not been done it
> is failing:
> 
> libtool: link: mpif90 -shared   .libs/fort-attio.o .libs/fort-control.o 
> .libs/fort-dim.o .libs/fort-genatt.o .libs/fort-geninq.o .libs/fort-genvar.o 
> .libs/fort-lib.o .libs/fort-misc.o .libs/fort-v2compat.o .libs/fort-vario.o 
> .libs/fort-var1io.o .libs/fort-varaio.o .libs/fort-varmio.o 
> .libs/fort-varsio.o .libs/fort-nc4.o   --whole-archive 
> ../f90/.libs/libnetcdff90.a --no-whole-archive  -rpath 
> /data/kb/compile/netcdf-4.1.3-rc1-snapshot2011060120/liblib/.libs -rpath 
> /opt/netcdf-4.1.3-rc1-snapshot2011060120_IFORT-par/lib -L/opt/hdf5-par/lib 
> ../liblib/.libs/libnetcdf.so -L/usr/lib /opt/hdf5-1.8.6-par/lib/libhdf5_hl.a 
> /opt/hdf5-1.8.6-par/lib/libhdf5.a -lz /usr/lib/libcurl-gnutls.so 
> -L/opt/mpich2-1.3.2p1-romio/lib 
> -L/data/opt/intel/composerxe-2011.2.137/compiler/lib/ia32 
> -L/data/opt/intel/composerxe-2011.2.137/mkl/lib/ia32 
> -L/usr/lib/gcc/i686-linux-gnu/4.4.5/ 
> -L/usr/lib/gcc/i686-linux-gnu/4.4.5/../../../../lib/ -L/lib/../lib/ 
> -L/usr/lib/../lib/ -L/data/opt/intel/composerxe-2011.2.
 137/compiler/lib/ia32/ -L/data/opt/intel/composerxe-2011.2.137/mkl/lib/ia32/ 
-L/usr/lib/gcc/i686-linux-gnu/4.4.5/../../../ -L/lib/ -L/usr/lib/ 
-L/usr/lib/i686-linux-gnu -lmpichf90 -lmpich 
/opt/mpich2-1.3.2p1-romio/lib/libopa.a /opt/mpich2-1.3.2p1-romio/lib/libmpl.a 
-lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo_pic -lintlc -lgcc_s 
-lirc_s -ldl -lc    -soname libnetcdff.so.5 -o .libs/libnetcdff.so.5.1.0
> ifort: command line warning #10006: ignoring unknown option '-fwhole-archive'
> ifort: command line warning #10006: ignoring unknown option 
> '-fno-whole-archive'
> ifort: command line warning #10156: ignoring option '-r'; no argument required
> ifort: command line warning #10156: ignoring option '-r'; no argument required
> ifort: error #10236: File not found: 
> '/opt/netcdf-4.1.3-rc1-snapshot2011060120_IFORT-par/lib'
> 
> ^^^^^^^
> 
> the fatal error
> 
> 
> ifort: command line warning #10156: ignoring option '-s'; no argument
> required
> ifort: error #10236: File not found:  'libnetcdff.so.5'
> make[3]: *** [libnetcdff.la] Error 1
> 
> on top of the above error "find . -name libnetcdff.so.5 -print" gives
> nothing
> 
> 
> 
> make[3]: Leaving directory
> `/data/kb/compile/netcdf-4.1.3-rc1-snapshot2011060120/fortran'
> make[2]: *** [all] Error 2
> make[2]: Leaving directory
> `/data/kb/compile/netcdf-4.1.3-rc1-snapshot2011060120/fortran'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory
> `/data/kb/compile/netcdf-4.1.3-rc1-snapshot2011060120'
> make: *** [all] Error 2
> 
> 
> Karsten
> 
> 
> On Wed, Jun 01, 2011 at 02:42:16 -0600, Unidata netCDF Support wrote:
> > > Hi Ed
> > >
> > > here it comes
> > >
> > > Karsten
> > >
> >
> > Howdy Karsten!
> >
> > I have made a few changes in the build system, and I wonder if you could 
> > give it another try. Also, please try with --disable-shared as a configure 
> > option to see if that works.
> >
> > ftp://ftp.unidata.ucar.edu/pub/netcdf/snapshot/netcdf-4-daily.tar.gz
> >
> > Thanks,
> >
> > Ed
> >
> > Ticket Details
> > ===================
> > Ticket ID: LEF-356666
> > Department: Support netCDF
> > Priority: Urgent
> > Status: Closed
> >
> >
> 
> --
> ----------------------------------------------------------------------
> Karsten Bolding                   Tel: +45 64422092
> Strandgyden 25                    Fax: +45 64422068
> DK-5466 Asperup                   E-mail: address@hidden
> 
> http://www.findvej.dk/Strandgyden25,5466,7,3
> ----------------------------------------------------------------------
> 
> 

Does this still happen when you configure with --disable-shared?

Also, you should be doing a make distclean between each attempt at building 
netCDF.

Thanks,

Ed

Ticket Details
===================
Ticket ID: LEF-356666
Department: Support netCDF
Priority: Urgent
Status: Closed