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[netCDF #DLK-535165]: -rpath unrecognized during "make check"

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  • Subject: [netCDF #DLK-535165]: -rpath unrecognized during "make check"
  • Date: Fri, 20 Aug 2010 09:30:03 -0600
Hi Matt,

> I am attempting to install netcdf 4.1.1 on our cluster.  "make" and "make
> install" run without error, however when running "make check" I get an
> error in directory .../netcdf-4.1.1/nf_test.  The attached log file is
> the output from running "make check install".  As shown in the file,
> I get the following error:
> 
> libtool: link: /usr/mpi/intel/openmpi-1.4.1/bin/mpif77 -I../fortran 
> -I/data/libraries/hdf5/include -I/data/libraries/zlib/include -I../libsrc4 
> -I../f90 -g -rpath /usr/mpi/intel/openmpi-1.4.1/lib64 -o nf_test test_get.o 
> test_put.o nf_error.o nf_test.o test_read.o test_write.o util.o fortlib.o  
> -L/data/libraries/hdf5/lib -L/data/libraries/zlib/lib -L/usr/kerberos/lib64 
> ../libsrc4/.libs/libnetcdf.a -lcurl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err 
> -lidn -lssl -lcrypto /usr/mpi/intel/openmpi-1.4.1/lib64/libmpi_f90.so 
> /usr/mpi/intel/openmpi-1.4.1/lib64/libmpi_f77.so 
> /usr/mpi/intel/openmpi-1.4.1/lib64/libmpi.so 
> /usr/mpi/intel/openmpi-1.4.1/lib64/libopen-rte.so 
> /usr/mpi/intel/openmpi-1.4.1/lib64/libopen-pal.so -ldl -lnsl -lutil 
> /data/libraries/hdf5/lib/libhdf5_hl.a /data/libraries/hdf5/lib/libhdf5.a -lm 
> -lz -pthread -rpath /usr/mpi/intel/openmpi-1.4.1/lib64 -rpath 
> /usr/mpi/intel/openmpi-1.4.1/lib64
> ifort: command line warning #10156: ignoring option '-r'; no argument required
> ifort: command line warning #10156: ignoring option '-r'; no argument required
> ifort: command line warning #10156: ignoring option '-r'; no argument required
> ipo: warning #11009: file format not recognized for 
> /usr/mpi/intel/openmpi-1.4.1/lib64
> /usr/mpi/intel/openmpi-1.4.1/lib64: file not recognized: Is a directory
> Software information:
> Fortran 90 compiler: openmpi-1.4.1 mpif90
> Fortran 77 compiler: openmpi-1.4.1 mpif77
> C compiler: openmpi-1.4.1 mpicc
> C++ compiler: openmpi-1.4.1 mpicxx
> HDF5 was compiled with "--enable-parallel" flag and compiled without error.
> Netcdf makefiles are configured with the following command (after setting 
> environment variables):
> ./configure --with-hdf5=/data/libraries/hdf5 --with-zlib=/data/libraries/zlib 
> --enable-fortran --enable-netcdf-4
> 
> Any help would be appreciated.

Sorry, but we haven't been able to make progress on this from the information 
you 
sent.  Please send us the complete output of configure and make check, and also 
the config.log file, as listed here:

  http://www.unidata.ucar.edu/netcdf/docs/netcdf-install/Reporting-Problems.html

If you are re-doing the build to get this, please make sure you run "make
distclean" first.

Thanks,

--Russ

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: DLK-535165
Department: Support netCDF
Priority: High
Status: Closed