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[netCDF #XEI-631234]: Failure to compile netcdf 4.1.1 w/ PGI 10.5 (64-bit linux) (corrected with logs attached)

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  • Subject: [netCDF #XEI-631234]: Failure to compile netcdf 4.1.1 w/ PGI 10.5 (64-bit linux) (corrected with logs attached)
  • Date: Fri, 04 Jun 2010 11:32:33 -0600
Hi Bill,

> While, ironically, I can get netcdf 4.1.1 to compile for MacOS
> 10.6/64bit, I now I can’t get it to do it for Linux (Mandriva
> 2010.0) 64 bit and I’m feeling a little silly over it. This is a new
> error early on in the build process compared to that which I’m
> accustomed and I’m not seeing the same error reported in the message
> boards. I’m attaching the config and make logs.
> 
> My configuration for the compilers is:
> 
> 
> setenv CC pgcc
> setenv FC pgf90
> setenv F90 pgf90
> setenv F77 pgf77
> setenv CXX pgCC
> setenv CPP 'pgCC -E'
> setenv CFLAGS " -Msignextend "
> setenv CPPFLAGS " -DNDEBUG -DpgiFortran "
> setenv CXXFLAGS " "
> setenv F90FLAGS " "
> setenv FFLAGS " -w "
> setenv LDFLAGS " "

The problem seems to be compiling the test programs for C++ API:
...
> libtool: link:  pgCC --prelink_objects --instantiation_dir
Template.dir   netcd> f.o ncvalues.o
> pgCC-Warning-prelink_objects switch is deprecated
> pgCC-Warning-instantiation_dir switch is deprecated
> /usr/lib64/crt1.o: In function `_start':
>
/home/qateam/rpm/BUILD/glibc-2.10.1/csu/../sysdeps/x86_64/elf/start.S:109:
unde> fined reference to `main'
> netcdf.o: In function `NcFile::__ct(char const *, NcFile::FileMode,
unsigned lo> ng *, unsigned long, NcFile::FileFormat)':
> /usr/local/netcdf-4.1.1/cxx/./netcdf.cpp:382: undefined reference to 
> `nc__open'

If you really need the C++ API, here's another possibility.

You have set 

> setenv CXX pgCC
> setenv CPP 'pgCC -E'

but the Portland Group site

  http://www.pgroup.com/resources/netcdf/netcdf40_pgi2010.htm

recommends using

  setenv CC pgCC
  setenv CXX pgcpp

The environment variable "CPP" isn't used by the netCDF configure
script, so setting it has no effect as far as I know.

--Russ

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: XEI-631234
Department: Support netCDF
Priority: Normal
Status: Closed