[Support #UEO-800135]: problem installing UDUNITS version 1.12.4

Sebastien,

> Once again, I've tried to install UDUNITS version 1.12.4 on my Linux box
> (running CentOS 4.3), but the install failed. I am not sure that I'll learn 
> how
> to do an clean install...
> :)
> 
> Attached are the logs file generated during the install.

I didn't see anything wrong with the log files: it looked like the build and 
install went OK.

Why do you say it failed?

> Thanks for your help,
> Sebastien
> 
> --
> Sebastien Biraud
> Lawrence Berkeley National Laboratory
> One Cyclotron Road  MS 90R-1116
> Berkeley, CA 94720
> USA
> 
> tel:(510) 486 6084
> fax:(510) 486 5686
> e-mail: address@hidden
> 
> 
> 
> making `test' in directory /home/tmp/udunits-1.12.4/src/udunits
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/udunits'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/udunits'
> make[2]: `udunits' is up to date.
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/udunits'
> ./udunits ../lib/udunits.dat <test.in | sed 's/\.00* UTC/.00 UTC/' \
> >test.out
> Success!
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/udunits'
> 
> returning to directory /home/tmp/udunits-1.12.4/src
> 
> 
> making `dynamic' in directory /home/tmp/udunits-1.12.4/src/perl
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/perl'
> rm -f blib/arch/auto/UDUNITS/UDUNITS.so
> gcc  -shared UDUNITS.o  -o blib/arch/auto/UDUNITS/UDUNITS.so   
> -L/home/tmp/udunits-1.12.4/src/perl/../lib -ludunits -lm
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/perl'
> 
> checking for manual-page index command...
> checking for C compiler... /opt/intel/cc/9.1.042/bin/icc
> checking type of operating system... linux
> checking for dependency generation mechanism... /opt/intel/cc/9.1.042/bin/icc 
> -M
> checking for gcc... /opt/intel/cc/9.1.042/bin/icc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether /opt/intel/cc/9.1.042/bin/icc accepts -g... yes
> checking for /opt/intel/cc/9.1.042/bin/icc option to accept ANSI C... none 
> needed
> checking how to run the C preprocessor... /opt/intel/cc/9.1.042/bin/icc -E
> checking the C preprocessor... works
> checking for C const... yes
> checking for C volatile... yes
> checking for C signed... yes
> checking for C function prototypes... yes
> checking for standard C variadic functions... yes
> checking for standard C string generation... yes
> checking for standard C token pasting... yes
> checking C void pointer... yes
> checking for ar... ar
> checking for tar flags... -chof
> checking for ranlib... ranlib
> checking binary distribution directory... /home/ftp/pub/binary/dummy_system
> checking the installation prefix... /home/tmp/udunits-1.12.4
> checking the installation exec-prefix... /home/tmp/udunits-1.12.4
> checking for neqn... neqn
> checking for tbl... tbl
> checking for ar... (cached) ar
> checking for C math library...
> checking for return sin(0.0) != 0 in default library(s)... yes
> checking style for cfortran.h... Standard
> checking for Fortran integer type equivalent to C pointer... integer*4
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking stddef.h usability... yes
> checking stddef.h presence... yes
> checking for stddef.h... yes
> checking C header file <stddef.h> for typedef size_t... declared
> checking for stddef.h... (cached) yes
> checking C header file <stddef.h> for typedef ptrdiff_t... declared
> checking float.h usability... yes
> checking float.h presence... yes
> checking for float.h... yes
> checking for stdlib.h... (cached) yes
> checking C header file <stdlib.h> for typedef size_t... declared
> checking for atexit... yes
> checking for stdlib.h... (cached) yes
> checking C header file <stdlib.h> for function atexit()... undeclared
> checking for getenv... yes
> checking for stdlib.h... (cached) yes
> checking C header file <stdlib.h> for function getenv()... undeclared
> checking for string.h... (cached) yes
> checking C header file <string.h> for typedef size_t... declared
> checking for strerror... yes
> checking for string.h... (cached) yes
> checking C header file <string.h> for function strerror()... undeclared
> checking for string.h... (cached) yes
> checking C header file <string.h> for function strchr()... undeclared
> checking for string.h... (cached) yes
> checking C header file <string.h> for function strcpy()... undeclared
> checking for string.h... (cached) yes
> checking C header file <string.h> for function strrchr()... undeclared
> checking for string.h... (cached) yes
> checking C header file <string.h> for function strncpy()... undeclared
> checking for string.h... (cached) yes
> checking C header file <string.h> for function strtok()... undeclared
> checking for strstr... yes
> checking for string.h... (cached) yes
> checking C header file <string.h> for function strstr()... undeclared
> checking for memmove... yes
> checking for string.h... (cached) yes
> checking C header file <string.h> for function memmove()... undeclared
> checking time.h usability... yes
> checking time.h presence... yes
> checking for time.h... yes
> checking C header file <time.h> for typedef time_t... declared
> checking for time.h... (cached) yes
> checking C header file <time.h> for typedef size_t... declared
> checking for difftime... yes
> checking for time.h... (cached) yes
> checking C header file <time.h> for function difftime()... undeclared
> checking for strftime... yes
> checking for time.h... (cached) yes
> checking C header file <time.h> for function strftime()... undeclared
> checking search.h usability... yes
> checking search.h presence... yes
> checking for search.h... yes
> checking C header file <search.h> for typedef ENTRY... declared
> checking for search.h... (cached) yes
> checking C header file <search.h> for typedef ACTION... declared
> checking for search.h... (cached) yes
> checking C header file <search.h> for typedef VISIT... declared
> checking for tsearch... yes
> checking for search.h... (cached) yes
> checking C header file <search.h> for function tsearch()... undeclared
> checking for tfind... yes
> checking for search.h... (cached) yes
> checking C header file <search.h> for function tfind()... undeclared
> checking for tdelete... yes
> checking for search.h... (cached) yes
> checking C header file <search.h> for function tdelete()... undeclared
> checking for twalk... yes
> checking for search.h... (cached) yes
> checking C header file <search.h> for function twalk()... undeclared
> checking for perl... perl
> checking for type of perl executable to create... dynamic
> checking for position-independent compilation flags... ''
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating lib/Makefile
> config.status: creating lib/udunits.inc
> config.status: creating udunits/Makefile
> config.status: creating perl/Makefile.PL
> config.status: creating port/master.mk
> config.status: creating port/Makefile
> config.status: creating port/misc/Makefile
> config.status: creating port/cfortran/Makefile
> config.status: creating port/misc/udposix.h
> config.status: executing default commands
> 
> 
> making `install' in directory /home/tmp/udunits-1.12.4/src/port
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/port'
> 
> making `install' in directory /home/tmp/udunits-1.12.4/src/port/misc
> 
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/port/misc'
> make -w /home/tmp/udunits-1.12.4/lib LIBDIR=/home/tmp/udunits-1.12.4/lib
> make[3]: Entering directory `/home/tmp/udunits-1.12.4/src/port/misc'
> make[3]: `/home/tmp/udunits-1.12.4/lib' is up to date.
> make[3]: Leaving directory `/home/tmp/udunits-1.12.4/src/port/misc'
> ar rcuv /home/tmp/udunits-1.12.4/lib/libudport.a uddummy.o
> r - uddummy.o
> ranlib /home/tmp/udunits-1.12.4/lib/libudport.a
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/port/misc'
> 
> returning to directory /home/tmp/udunits-1.12.4/src/port
> 
> 
> making `install' in directory /home/tmp/udunits-1.12.4/src/port/cfortran
> 
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/port/cfortran'
> make[2]: Nothing to be done for `install'.
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/port/cfortran'
> 
> returning to directory /home/tmp/udunits-1.12.4/src/port
> 
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/port'
> 
> returning to directory /home/tmp/udunits-1.12.4/src
> 
> 
> making `install' in directory /home/tmp/udunits-1.12.4/src/lib
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> ar rcuv libudunits.a utlib.o utparse.o utscan.o udalloc.o
> case "" in \
> '') ;; \
> *)  ar rucv libudunits.a ;; \
> esac
> ranlib libudunits.a
> cp libudunits.a /home/tmp/udunits-1.12.4/lib/libudunits.a
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Nothing to be done for `installed_header'.
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> cp udunits.inc /home/tmp/udunits-1.12.4/include/udunits.inc
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Nothing to be done for `installed_etcfile'.
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Nothing to be done for `installed_manual'.
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> make[2]: Nothing to be done for `installed_manual'.
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> 
> returning to directory /home/tmp/udunits-1.12.4/src
> 
> 
> making `install' in directory /home/tmp/udunits-1.12.4/src/udunits
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/udunits'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/udunits'
> /opt/intel/cc/9.1.042/bin/icc -o udunits -g -O2 udunits.o 
> -L/home/tmp/udunits-1.12.4/src/lib -ludunits 
> -L/home/tmp/udunits-1.12.4/src/port/misc -ludport
> cp udunits /home/tmp/udunits-1.12.4/bin/udunits
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/udunits'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/udunits'
> mkdir -p /home/tmp/udunits-1.12.4/man/man1
> chmod u+rwx,g+rws,o=rx /home/tmp/udunits-1.12.4/man/man1
> case `uname -s` in \
> OSF1*|IRIX*|HP-UX) \
> sed \
> -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\
> udunits.1 > /home/tmp/udunits-1.12.4/man/man1/udunits.1;; \
> *) \
> sed \
> -e '/^\.TH/s/$D\ate: \([0-9]*\)\/\([0-9]*\)\/\([0-9]*\).*\$/\1-\2-\3/'\
> udunits.1 | tbl | neqn > /home/tmp/udunits-1.12.4/man/man1/udunits.1;; \
> esac
> extension=`echo udunits.1 | sed 's/[^.]*\.//'`; \
> subchapter=`echo $extension | sed 's/.//'`; \
> case "$subchapter" in \
> '') ;; \
> *)  chapter=`echo $extension | sed 's/\(.\).*/\1/'`; \
> if test -d /home/tmp/udunits-1.12.4/man/man1$subchapter; then \
> : true; \
> else \
> mkdir /home/tmp/udunits-1.12.4/man/man1$subchapter; \
> fi; \
> rm -f /home/tmp/udunits-1.12.4/man/man1$subchapter/udunits.1; \
> ln -s ../`basename /home/tmp/udunits-1.12.4/man/man1`/udunits.1 \
> /home/tmp/udunits-1.12.4/man/man1$subchapter/udunits.1; \
> ;; \
> esac
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/udunits'
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/udunits'
> 
> returning to directory /home/tmp/udunits-1.12.4/src
> 
> 
> making `install' in directory /home/tmp/udunits-1.12.4/src/perl
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/perl'
> cp UDUNITS.pm blib/lib/UDUNITS.pm
> AutoSplitting blib/lib/UDUNITS.pm (blib/lib/auto/UDUNITS)
> rm -f blib/arch/auto/UDUNITS/UDUNITS.so
> gcc  -shared UDUNITS.o  -o blib/arch/auto/UDUNITS/UDUNITS.so   
> -L/home/tmp/udunits-1.12.4/src/perl/../lib -ludunits -lm
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/perl'
> 
> 
> making `all' in directory /home/tmp/udunits-1.12.4/src/port
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/port'
> 
> making `all' in directory /home/tmp/udunits-1.12.4/src/port/misc
> 
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/port/misc'
> /opt/intel/cc/9.1.042/bin/icc -c -g -O2 -I.  -D_REENTRANT -DpgiFortran 
> uddummy.c
> ar rcuv libudport.a uddummy.o
> a - uddummy.o
> case "" in \
> '') ;; \
> *)  ar rucv libudport.a ;; \
> esac
> ranlib libudport.a
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/port/misc'
> 
> returning to directory /home/tmp/udunits-1.12.4/src/port
> 
> 
> making `all' in directory /home/tmp/udunits-1.12.4/src/port/cfortran
> 
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/port/cfortran'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/port/cfortran'
> 
> returning to directory /home/tmp/udunits-1.12.4/src/port
> 
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/port'
> 
> returning to directory /home/tmp/udunits-1.12.4/src
> 
> 
> making `all' in directory /home/tmp/udunits-1.12.4/src/lib
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/lib'
> ln -s ../port/misc/udalloc.c .
> ln -s ../port/misc/udalloc.h .
> /opt/intel/cc/9.1.042/bin/icc -c -g -O2 -I../port/misc -I../port/cfortran 
> -DUT_DEFAULT_PATH='"/home/tmp/udunits-1.12.4/etc/udunits.dat"' -DpgiFortran 
> utlib.c
> /opt/intel/cc/9.1.042/bin/icc -c -g -O2 -I../port/misc -I../port/cfortran 
> -DUT_DEFAULT_PATH='"/home/tmp/udunits-1.12.4/etc/udunits.dat"' -DpgiFortran 
> utparse.c
> /opt/intel/cc/9.1.042/bin/icc -c -g -O2 -I../port/misc -I../port/cfortran 
> -DUT_DEFAULT_PATH='"/home/tmp/udunits-1.12.4/etc/udunits.dat"' -DpgiFortran 
> utscan.c
> /opt/intel/cc/9.1.042/bin/icc -c -g -O2 -I../port/misc -I../port/cfortran 
> -DUT_DEFAULT_PATH='"/home/tmp/udunits-1.12.4/etc/udunits.dat"' -DpgiFortran 
> udalloc.c
> ar rcuv libudunits.a utlib.o utparse.o utscan.o udalloc.o
> a - utlib.o
> a - utparse.o
> a - utscan.o
> a - udalloc.o
> case "" in \
> '') ;; \
> *)  ar rucv libudunits.a ;; \
> esac
> ranlib libudunits.a
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/lib'
> 
> returning to directory /home/tmp/udunits-1.12.4/src
> 
> 
> making `all' in directory /home/tmp/udunits-1.12.4/src/udunits
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/udunits'
> make[2]: Entering directory `/home/tmp/udunits-1.12.4/src/udunits'
> /opt/intel/cc/9.1.042/bin/icc -c -g -O2 -I../lib -I../port/misc -DpgiFortran 
> udunits.c
> /opt/intel/cc/9.1.042/bin/icc -o udunits -g -O2 udunits.o 
> -L/home/tmp/udunits-1.12.4/src/lib -ludunits 
> -L/home/tmp/udunits-1.12.4/src/port/misc -ludport
> make[2]: Leaving directory `/home/tmp/udunits-1.12.4/src/udunits'
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/udunits'
> 
> returning to directory /home/tmp/udunits-1.12.4/src
> 
> cd perl && perl Makefile.PL
> Checking if your kit is complete...
> Looks good
> Writing Makefile for UDUNITS
> 
> making `dynamic' in directory /home/tmp/udunits-1.12.4/src/perl
> 
> make[1]: Entering directory `/home/tmp/udunits-1.12.4/src/perl'
> /usr/bin/perl /usr/lib/perl5/5.8.5/ExtUtils/xsubpp  -typemap 
> /usr/lib/perl5/5.8.5/ExtUtils/typemap -typemap typemap  UDUNITS.xs > 
> UDUNITS.xsc && mv UDUNITS.xsc UDUNITS.c
> /opt/intel/cc/9.1.042/bin/icc -c  -I../lib -I../port/misc -D_REENTRANT 
> -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include 
> -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe 
> -m64   -DVERSION=\"1.12.4\" -DXS_VERSION=\"1.12.4\" -fPIC 
> "-I/usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi/CORE"  -DpgiFortran 
> UDUNITS.c
> Running Mkbootstrap for UDUNITS ()
> chmod 644 UDUNITS.bs
> rm -f blib/arch/auto/UDUNITS/UDUNITS.so
> gcc  -shared UDUNITS.o  -o blib/arch/auto/UDUNITS/UDUNITS.so   
> -L/home/tmp/udunits-1.12.4/src/perl/../lib -ludunits -lm
> make[1]: Leaving directory `/home/tmp/udunits-1.12.4/src/perl'

Regards,
Steve Emmerson

Ticket Details
===================
Ticket ID: UEO-800135
Department: Support UDUNITS
Priority: Normal
Status: Closed