[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[netCDF #EUY-919925]: Help - h5 test failures (netcdf4-4.4.1 + netcdf-fortran-4.4.1 + netcdf-cxx4-4.3.0)

This archive contains answers to questions sent to Unidata support through mid-2025. Note that the archive is no longer being updated. We provide the archive for reference; many of the answers presented here remain technically correct, even if somewhat outdated. For the most up-to-date information on the use of NSF Unidata software and data services, please consult the Software Documentation first.

  • Subject: [netCDF #EUY-919925]: Help - h5 test failures (netcdf4-4.4.1 + netcdf-fortran-4.4.1 + netcdf-cxx4-4.3.0)
  • Date: Thu, 08 Sep 2016 11:07:07 -0600
Hi Donald,

From the log file you provided, I see the following:

HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
  #000: H5F.c line 604 in H5Fopen(): unable to open file
    major: File accessibilty
    minor: Unable to open file
  #001: H5Fint.c line 1085 in H5F_open(): unable to read superblock
    major: File accessibilty
    minor: Read failed
  #002: H5Fsuper.c line 294 in H5F_super_read(): unable to load superblock
    major: Object cache
    minor: Unable to protect metadata
  #003: H5AC.c line 1320 in H5AC_protect(): H5C_protect() failed.
    major: Object cache
    minor: Unable to protect metadata
  #004: H5C.c line 3574 in H5C_protect(): can't load entry
    major: Object cache
    minor: Unable to load metadata into cache
  #005: H5C.c line 7954 in H5C_load_entry(): unable to load entry
    major: Object cache
    minor: Unable to load metadata into cache
  #006: H5Fsuper_cache.c line 476 in H5F_sblock_load(): truncated file: eof = 
96, sblock->base_addr = 0, stored_eoa = 2192
    major: File accessibilty
    minor: File has been truncated

This suggests there is a problem with the libhdf5 library; off the top of my 
head, I am wondering if 1.8.14 is too early a version.  I will test on my end, 
but I wonder if upgrading to the latest libhdf5 (1.8.17) would make a 
difference.  I am going to go test my installation against 1.8.14 and will 
update the documentation accordingly.

If this does not correct the issue, can you confirm that you have read access 
to all of the files in the h5_test/ directory?

-Ward

> Hi
> 
> I am experiencing some compilation errors or failure around the h5
> test - should be the dimscales and rd tests as per the attached files.
> I am trying to compile netcdf4-4.4.1, netcdf-fortran-4.4.1 &
> netcdf-cxx4-4.3.0. The script i have developed for the compilation is
> also attached!!
> 
> Where am i missing it and how can i resolve it??
> 
> 
> Ultimately, i want to build and run WRF and WRF-HYDRO!!
> 
> 
> 
> also, for dealing with large data files - are there any flags i need to 
> define?
> 
> 
> ------
> Donald
> 
> "You cannot solve the problems of today by the same thinking that created 
> them"
> 
> 


Ticket Details
===================
Ticket ID: EUY-919925
Department: Support netCDF
Priority: Normal
Status: Closed
===================
NOTE: All email exchanges with Unidata User Support are recorded in the Unidata 
inquiry tracking system and then made publicly available through the web.  If 
you do not want to have your interactions made available in this way, you must 
let us know in each email you send to us.