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[netCDF #QFD-237189]: netcdf-c-4.3.3 (TWO CHECKS FAILED)

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  • Subject: [netCDF #QFD-237189]: netcdf-c-4.3.3 (TWO CHECKS FAILED)
  • Date: Thu, 22 Jan 2015 13:44:10 -0700
Peter,

> I have tried to install zlib and hdf5 but get errors during the make check of 
> HDF5.
> I have summarised my steps and have copy the log files to the bottom of this 
> email
> 
> Would you be able to have a look and let me know what the problem is, please.

I don't see a problem.  When you ran "make check" for hdf5, 
there were no failed tests and the line 

   all tests were successful

appears (twice) in the output.
  
> Our system is Centos 6.6, with Fortran Compiler and C Compiler installed.
> 
> To access these I loaded a module environment file.
> 
> Steps taken
> 
> I have download and installed zlib.1.2.8
> Configured using the following commands
> 
> ./configure –prefix=home/mse_sw/zlib.1.2.8
> make check
> make install
> 
> this seems to have installed well.
> 
> I then tried to install hdf5 using the following commands to configure
> 
> ./configure --prefix=/home/mse_sw/hdf5 --enable-fortran --enable-cxx 
> --with-zlib=/home/mse_sw/zlib.1.2.8/  >> compile.txt   (SEE BELOW)

Although it doesn't cause any problems, you didn't need to include 
--enable-fortran or --enable-cxx for the netCDF-C library (or for
later build of the netCDF-Fortran library).  Neither the HDF5
Fortran or C++ libraries are used by netCDF.

> This seems to go well but I get loads of warnings similar to this:
> 
> plugin.c:303: warning: will never be executed
> plugin.c:303: warning: will never be executed
> plugin.c:303: warning: will never be executed
> plugin.c:303: warning: will never be executed
> plugin.c:305: warning: will never be executed
> plugin.c:305: warning: will never be executed
> plugin.c:305: warning: will never be executed
> plugin.c:305: warning: will never be executed
> plugin.c:305: warning: will never be executed
> plugin.c:307: warning: will never be executed
> plugin.c:307: warning: will never be executed
> plugin.c:307: warning: will never be executed
> plugin.c:307: warning: will never be executed
> plugin.c:307: warning: will never be executed

Those are merely warnings, not errors, and can be ignored
when you're building HDF5.

> Then when I try to do a make check, once again this all seems to go wrong - 
> see make _check.txt  (SEE BELOW)
> 
> I would be really grateful if you could advise me what is wrong and if I have 
> missed any vital steps.
> 
> I haven’t set any environment variables for flags such as CC , FC etc

I see no indications of any errors in building HDF5.  You should now
be able to install it just by running "make install".

--Russ

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: QFD-237189
Department: Support netCDF
Priority: Normal
Status: Closed