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20030919: netCDF installation problems
- Subject: 20030919: netCDF installation problems
- Date: Fri, 19 Sep 2003 11:10:06 -0600
Janne,
> To: address@hidden
> From: Janne Kauhanen <address@hidden>
> Subject: Installing problems
> Organization: University of Helsinki
> Keywords: netCDF RedHat Linux Absoft Fortran
The above message contained the following:
> I have tried to istall NETCDF to my LINUX (RedHat) workstation, but
> there seems to be some problems. It goes fine till test which failes in
> fortran part. I have tried with different compiler (Absoft Fortran)
> options, but nothing seems to help. Could You help me?
>
> A. Linux stratus.atm.helsinki.fi 2.4.18-5 #1 Mon Jun 10 15:31:48 EDT
> 2002 i686 unknown
>
> B. 3.5.0
>
> C. Attachment (macros.make)
>
> D. C compiler: /usr/bin/gcc
> fortran/fortran90 compiler: /usr/local/absoft/bin/f90
> C++ compiler: /usr/bin/g++
>
> E. Attachment (configure.log)
>
> F. Attachment (config.log)
>
> G. Attachment (make.log)
>
> H. Attachment (test.log)
>
> Thank You,
> Janne
> --
> |-- Janne Kauhanen (M.Sc.) address@hidden --|
> |-- Research Scientist +358-9-191-50854 --|
> |-- Department of Physical Sciences +358-40-5805705 --|
> |-- Division of Atmospheric Sciences P.O.Box 64 --|
> |-- University of Helsinki FIN 00014 Univ. of Helsinki --|
...
> filename="macros.make"
...
> filename="configure.log"
...
> filename="config.log"
...
> filename="make.log"
...
> filename="test.log"
...
> Making `test' in directory /home/users/jvpkauha/netcdf-3.5.0/src/nf_test
>
> make[2]: Entering directory `/home/users/jvpkauha/netcdf-3.5.0/src/nf_test'
> + /usr/local/absoft/bin/f90 -c -O2 -w -lU77 test_get.F
> + /usr/local/absoft/bin/f90 -c -O2 -w -lU77 test_put.F
> + /usr/local/absoft/bin/f90 -c -O2 -w -lU77 nf_error.F
> + /usr/local/absoft/bin/f90 -c -O2 -w -lU77 nf_test.F
> + /usr/local/absoft/bin/f90 -c -O2 -w -lU77 test_read.F
> + /usr/local/absoft/bin/f90 -c -O2 -w -lU77 test_write.F
> + /usr/local/absoft/bin/f90 -c -O2 -w -lU77 util.F
> /usr/bin/gcc -c -O -w -DNDEBUG -DAbsoftProFortran fortlib.c
> /usr/local/absoft/bin/f90 -o nf_test -O2 -w -lU77 test_get.o test_put.o
> nf_error.o nf_test.o test_read.o test_write.o util.o fortlib.o
> ../libsrc/libnetcdf.a -lm
> ./nf_test -c
> ./nf_test
> *** Testing nf_strerror ...
> *** Testing nf_open ...
> *** Testing nf_close ...
> *** Testing nf_inq ...
> *** Testing nf_inq_dimid ...
> *** Testing nf_inq_dim ...
> *** Testing nf_inq_dimlen ...
> *** Testing nf_inq_dimname ...
> *** Testing nf_inq_varid ...
> *** Testing nf_inq_var ...
> *** Testing nf_inq_natts ...
> *** Testing nf_inq_ndims ...
> *** Testing nf_inq_nvars ...
> *** Testing nf_inq_unlimdim ...
> *** Testing nf_inq_vardimid ...
> *** Testing nf_inq_varname ...
> *** Testing nf_inq_varnatts ...
> *** Testing nf_inq_varndims ...
> *** Testing nf_inq_vartype ...
> *** Testing nf_get_var1_text ...
> *** Testing nf_get_var1_int1 ...
> *** Testing nf_get_var1_int2 ...
> *** Testing nf_get_var1_int ...
> *** Testing nf_get_var1_real ...
> *** Testing nf_get_var1_double ...
> *** Testing nf_get_var_text ...
> *** Testing nf_get_var_int1 ...
> *** Testing nf_get_var_int2 ...
> *** Testing nf_get_var_int ...
> *** Testing nf_get_var_real ...
> *** Testing nf_get_var_double ...
> *** Testing nf_get_vara_text ...
> *** Testing nf_get_vara_int1 ...
> *** Testing nf_get_vara_int2 ...
> *** Testing nf_get_vara_int ...
> *** Testing nf_get_vara_real ...
> *** Testing nf_get_vara_double ...
> *** Testing nf_get_vars_text ...
> *** Testing nf_get_vars_int1 ...
> *** Testing nf_get_vars_int2 ...
> *** Testing nf_get_vars_int ...
> *** Testing nf_get_vars_real ...
> *** Testing nf_get_vars_double ...
> *** Testing nf_get_varm_text ...
> *** Testing nf_get_varm_int1 ...
> *** Testing nf_get_varm_int2 ...
> *** Testing nf_get_varm_int ...
> *** Testing nf_get_varm_real ...
> *** Testing nf_get_varm_double ...
> *** Testing nf_get_att_text ...
> *** Testing nf_get_att_int1 ...
> *** Testing nf_get_att_int2 ...
> *** Testing nf_get_att_int ...
> *** Testing nf_get_att_real ...
> *** Testing nf_get_att_double ...
> *** Testing nf_inq_att ...
> *** Testing nf_inq_attname ...
> *** Testing nf_inq_attid ...
> *** Testing nf_inq_attlen ...
> *** Testing nf_inq_atttype ...
> *** Testing nf_create ...
> *** Testing nf_redef ...
> *** Testing nf_enddef ...
> *** Testing nf_sync ...
> *** Testing nf_abort ...
> *** Testing nf_def_dim ...
> *** Testing nf_rename_dim ...
> *** Testing nf_def_var ...
> *** Testing nf_put_var1_text ...
> *** Testing nf_put_var1_int1 ...
> *** Testing nf_put_var1_int2 ...
> *** Testing nf_put_var1_int ...
> *** Testing nf_put_var1_real ...
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
>
>
> ### 4 FAILURES TESTING nf_put_var1_real! ###
> *** Testing nf_put_var1_double ...
> *** Testing nf_put_var_text ...
> *** Testing nf_put_var_int1 ...
> *** Testing nf_put_var_int2 ...
> *** Testing nf_put_var_int ...
> *** Testing nf_put_var_real ...
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
>
>
> ### 8 FAILURES TESTING nf_put_var_real! ###
> *** Testing nf_put_var_double ...
> *** Testing nf_put_vara_text ...
> *** Testing nf_put_vara_int1 ...
> *** Testing nf_put_vara_int2 ...
> *** Testing nf_put_vara_int ...
> *** Testing nf_put_vara_real ...
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
>
>
> ### 8 FAILURES TESTING nf_put_vara_real! ###
> *** Testing nf_put_vara_double ...
> *** Testing nf_put_vars_text ...
> *** Testing nf_put_vars_int1 ...
> *** Testing nf_put_vars_int2 ...
> *** Testing nf_put_vars_int ...
> *** Testing nf_put_vars_real ...
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
>
>
> ### 8 FAILURES TESTING nf_put_vars_real! ###
> *** Testing nf_put_vars_double ...
> *** Testing nf_put_varm_text ...
> *** Testing nf_put_varm_int1 ...
> *** Testing nf_put_varm_int2 ...
> *** Testing nf_put_varm_int ...
> *** Testing nf_put_varm_real ...
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
> Var value read not that expected
>
>
> ### 8 FAILURES TESTING nf_put_varm_real! ###
> *** Testing nf_put_varm_double ...
> *** Testing nf_rename_var ...
> *** Testing nf_put_att_text ...
> *** Testing nf_put_att_int1 ...
> *** Testing nf_put_att_int2 ...
> *** Testing nf_put_att_int ...
> *** Testing nf_put_att_real ...
> Numeric conversion not representable
>
> Numeric conversion not representable
>
> att. value read not that expected
> att. value read not that expected
>
>
> ### 4 FAILURES TESTING nf_put_att_real! ###
> *** Testing nf_put_att_double ...
> *** Testing nf_copy_att ...
> *** Testing nf_rename_att ...
> *** Testing nf_del_att ...
> *** Testing nf_set_fill ...
> Total number of failures: 40
> make[2]: *** [test] Error 1
> make[2]: Leaving directory `/home/users/jvpkauha/netcdf-3.5.0/src/nf_test'
> make[1]: *** [subdir_target] Error 1
> make[1]: Leaving directory `/home/users/jvpkauha/netcdf-3.5.0/src'
> make: *** [nf_test/test] Error 2
The "make test" is extremely rigorous and comprehensive. I suspect
that what you've found deals with a problem in the way the pgf90
compiler handles extreme floating-point values (i.e., values near the
limit of representability) rather than with any problem of the netCDF
package itself.
I suggest that you install the package and try it with some of your
netCDF files. I suspect that you won't have a problem. If you do,
please contact me.
Regards,
Steve Emmerson