[netCDFPerl #FUY-836234]: more netcdf perl build issues

Jonathan,

> I am trying to install netcdf-perl onto another system (after installing
> latest packages of zlib, hdf5, and netcdf 4.2). This time things error out
> at "make test" with the error:
> 
> Can't load 'blib/arch/auto/NetCDF/NetCDF.so' for module NetCDF:
> blib/arch/auto/NetCDF/NetCDF.so: undefined symbol: curl_easy_getinfo at
> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/DynaLoader.pm line 230.
> 
> NOTE: all the support reqd info is way below
> 
> I have confirmed libcurl is installed on the system:
> 
> # locate libcurl
> /usr/lib/libcurl.a
> /usr/lib/libcurl.so
> /usr/lib/libcurl.so.3
> /usr/lib/libcurl.so.3.0.0
> /usr/lib/pkgconfig/libcurl.pc
> /usr/lib64/libcurl.a
> /usr/lib64/libcurl.so
> /usr/lib64/libcurl.so.3
> /usr/lib64/libcurl.so.3.0.0
> /usr/lib64/pkgconfig/libcurl.pc
> 
> and that the linker has them cached in:
> 
> # ldconfig -p | grep libcurl
> libcurl.so.3 (libc6,x86-64) => /usr/lib64/libcurl.so.3
> libcurl.so.3 (libc6) => /usr/lib/libcurl.so.3
> libcurl.so (libc6,x86-64) => /usr/lib64/libcurl.so
> libcurl.so (libc6) => /usr/lib/libcurl.so
> 
> 
> Actually setting LD_LIBRARY _PATH to /usr/lib64 doesnt seem to help.
> 
> So... I am a little perplexed... Or must be overlooking something obvious.

It's not obvious to me what's wrong, either.

Drop into the "perl/" subdirectory and send me the output of the command "ldd 
blib/arch/auto/NetCDF/NetCDF.so".

> Thanks in advance for any assistance.
> 
> 
> Jonathan
> Jonathan B. Auerbach
> Systems Administrator
> NOAA/OAR/ESRL/GSD
> 
> 
> 
> Per the INSTALL file, here are the requested "support" items (it dies at
> make test):
> 
> A. Linux fvs-ana3.fsl.noaa.gov 2.6.18-274.17.1.el5 #1 SMP Wed Jan 4
> 22:45:44 EST 2012 x86_64 x86_64 x86_64 GNU/Linux
> B. VERSION = 1.2.4
> C. /usr/bin/cc
> D. # cat configure.log
> loading cache ./config.cache
> checking for manual-page index command...
> checking for perl... (cached) perl
> checking for perl manual page directory... /usr/share/man
> checking for value of perl POLLUTE variable... 0
> checking for neqn... (cached) neqn
> checking for tbl... (cached) tbl
> checking for c89... (cached) c89
> checking type of operating system... linux
> checking for tar flags... -chof
> checking for netCDF header-file... -I/usr/local/include
> checking for netCDF library... -L/usr/local/lib -lnetcdf -L/usr/local/lib
> -lhdf5 -lhdf5_hl
> checking for package version... 1.2
> creating ./config.status
> creating Makefile
> creating perl/Makefile.PL
> creating port/master.mk
> creating port/Makefile
> expanding `include's in file `Makefile'
> expanding `include's in file `perl/Makefile.PL'
> expanding `include's in file `port/master.mk'
> expanding `include's in file `port/Makefile'
> 
> E. # cat config.log
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
> 
> configure:635: checking for manual-page index command
> configure:648: checking for perl
> configure:694: checking for perl manual page directory
> configure:712: checking for value of perl POLLUTE variable
> configure:759: checking for neqn
> configure:791: checking for tbl
> configure:1099: checking for c89
> configure:1186: checking type of operating system
> configure:1263: checking for tar flags
> configure:1279: checking for netCDF header-file
> configure:1306: checking for netCDF library
> configure:1335: checking for package version
> 
> F. # cat makefile.log
> cd perl && perl Makefile.PL POLLUTE=0
> Writing Makefile for NetCDF
> 
> G. # cat make.log
> make[1]: Entering directory `/root/netcdf-perl-1.2.4/src'
> make[2]: Entering directory `/root/netcdf-perl-1.2.4/src'
> 
> making `dynamic' in directory /root/netcdf-perl-1.2.4/src/perl
> 
> make[3]: Entering directory `/root/netcdf-perl-1.2.4/src/perl'
> gcc -c  -I/usr/local/include -D_REENTRANT -D_GNU_SOURCE
> -fno-strict-aliasing -pipe -Wdeclaration-after-statement
> -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64
> -I/usr/include/gdbm -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic
> -DVERSION=\"1.2.4\" -DXS_VERSION=\"1.2.4\" -fPIC
> "-I/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE"   NetCDF.c
> Running Mkbootstrap for NetCDF ()
> chmod 644 NetCDF.bs
> rm -f blib/arch/auto/NetCDF/NetCDF.so
> gcc  -shared -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic NetCDF.o
> -o blib/arch/auto/NetCDF/NetCDF.so       \
> -L/usr/local/lib -lnetcdf -L/usr/local/lib -lhdf5 -lhdf5_hl
> \
> 
> chmod 755 blib/arch/auto/NetCDF/NetCDF.so
> cp NetCDF.bs blib/arch/auto/NetCDF/NetCDF.bs
> chmod 644 blib/arch/auto/NetCDF/NetCDF.bs
> make[3]: Leaving directory `/root/netcdf-perl-1.2.4/src/perl'
> 
> returning to directory /root/netcdf-perl-1.2.4/src
> 
> make[2]: Leaving directory `/root/netcdf-perl-1.2.4/src'
> make[1]: Leaving directory `/root/netcdf-perl-1.2.4/src'
> test ! -f perl/so_locations || chmod a+w perl/so_locations
> 
> H. # cat test.log
> make[1]: Entering directory `/root/netcdf-perl-1.2.4/src'
> 
> making `test' in directory /root/netcdf-perl-1.2.4/src/perl
> 
> make[2]: Entering directory `/root/netcdf-perl-1.2.4/src/perl'
> PERL_DL_NONLAZY=1 /usr/bin/perl "-Iblib/lib" "-Iblib/arch" test.pl
> Can't load 'blib/arch/auto/NetCDF/NetCDF.so' for module NetCDF:
> blib/arch/auto/NetCDF/NetCDF.so: undefined symbol: curl_easy_getinfo at
> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/DynaLoader.pm line 230.
> at test.pl line 5
> Compilation failed in require at test.pl line 5.
> BEGIN failed--compilation aborted at test.pl line 5.
> make[2]: *** [test_dynamic] Error 2
> make[2]: Leaving directory `/root/netcdf-perl-1.2.4/src/perl'
> make[1]: *** [perl/test] Error 1
> make[1]: Leaving directory `/root/netcdf-perl-1.2.4/src'
> make: *** [test] Error 2


Regards,
Steve Emmerson

Ticket Details
===================
Ticket ID: FUY-836234
Department: Support netCDF Perl
Priority: Normal
Status: Closed