John,
I'm running the downloaded "toolsUI-2.2.20.jar" files from my Desktop -
I could not get it to launch from WebStart (but this may be due to my
ignorance of WebStart), so I don't have console output; so it's not
clear what is happening when I try to save NetCDF - it just doesn't
actually update the file.
I have no problem saving to NcML, so I've attached a manually updated
NcML file, in the hope that you can use this - it corresponds to the
NetCDF file of the same name (which I sent previously). I've tried to
make the metadata as standard as possible, but I noted that in the
example in the CF Conventions documentation, the file had two further
2-d arrays for latititude and longitude of the rotated pole grid-points
(i.e. and explicit mapping); these are not present in the files, as they
were not in the source FieldsFiles - I don't know if this will cause you
problems.