[GEMPAK #AWI-238233]: GDDIAG seg fault

This is it right here:

[kmahoney@h202 CFAD]$ source /opt/gempak/6.2.0/Gemenviron
Can not find NAWIPS distribution.
Check Gemenviron NAWIPS definition -> /home/gempak/GEMPAK6.2.0

Edit line 24 of /opt/gempak/6.2.0/Gemenviron so that it points $NAWIPS to the 
correct location.  Then you should be able to source Gemenviron correctly and 
go from there.

-mj




> Hi Michael,
> Thanks for getting back to me so quickly -- you are correct; it's not
> sourcing the correct gempak:
> 
> [kmahoney@h202 CFAD]$ which gddiag
> /misc/whome/kmahoney/gempak/GEMPAK5.11.4/os/linux64/bin/gddiag
> 
> However, when I try to source the new gempak using either what the local
> linux cluster people told me (below), nothing happens, and when I try to
> hardwire the sourcing myself, this is what comes back:
> 
> [kmahoney@h202 CFAD]$ ls /opt/gempak/6.2.0/
> Gemenviron          Makefile                   bin    compile.out
> doc      gempak  ldm  resource  unidata
> Gemenviron.profile  README.License_disclaimer  comet  config
> extlibs  icons   os   scripts   versions
> 
> [kmahoney@h202 CFAD]$ source /opt/gempak/6.2.0/Gemenviron
> Can not find NAWIPS distribution.
> Check Gemenviron NAWIPS definition -> /home/gempak/GEMPAK6.2.0
> 
> I imagine this might be something to figure out w/ the local cluster
> people, as I'm evidently not familiar with how/where 6.2.0 was installed
> and how to properly source it.
> 
> Thanks again; I really appreciate your assistance.
> 
> Kelly
> 
> 
> > Kelly,
> >
> > None of us know how to use gempak, and it doesn't come
> > with any unit tests.  Can you please try it out for us?
> >
> > To change your environment, run:
> >
> > module switch gempak gempak/6.2.0
> >
> > If it all works, we can make it the default so you don't
> > have to do this step.
> >
> > Craig
> 
> 
> 
> On 2/10/2011 3:31 PM, Unidata GEMPAK Support wrote:
> > Hi Kelly,
> >
> > There is no known bug that would cause this behavior in GEMPAK 6.2.0.  I 
> > still have the gfdl grid files from our earlier discussion and can verify 
> > that GDDIAG performs as intended with the given inputs you listed.
> >
> > I'm thinking this might be a version conflict issue.  Can you verify that 
> > the GDDIAG executable was in fact built from 6.2.0 source?
> >
> > "which gddiag" should provide this information.
> >
> > If the output is /home/gempak/GEMPAK5.11.4/os/.../bin/gddiag then you're 
> > still sourcing the old Gemenviron file.  Check that ~gempak/NAWIPS/ is 
> > pointing to the updated GEMPAK6.2.0/ directory and not an older version.
> >
> > Michael
> > Unidata
> >
> >
> >> Hi Michael,
> >> I apologize for just now getting back to you about this issue, but my
> >> local cluster folks were just now able to install 6.2.0.
> >> In trying to test it out for them, I have gone back to my original
> >> objective with gddiag -- while the segmentation fault goes away, it
> >> unfortunately still does not work.
> >> I can't figure out what is going on -- when I enter all the same things
> >> as below, this is what is returned:
> >>
> >> GEMPAK-GDDIAG>l
> >> GDFILE   = gfdl_fut_comp_test_d02_f0500_pres.gem
> >> GDOUTF   = gfdl_fut_comp_d02_f0500_pres_full.gem
> >> GFUNC    = wg
> >> GDATTIM  = f05
> >> GLEVEL   = 800
> >> GVCORD   = pres
> >> GRDNAM   =
> >> GRDTYP   =
> >> GPACK    =
> >> GRDHDR   =
> >> PROJ     =
> >> GRDAREA  =
> >> KXKY     =
> >> MAXGRD   = 99999
> >> CPYFIL   = gfdl_fut_comp_test_d02_f0500_pres.gem
> >> ANLYSS   =
> >> GEMPAK-GDDIAG>r
> >> [DG -7]  Input grid WG ^400716/0000F005 @800 %PRES cannot be found.
> >> Parameters requested: GDFILE,GDOUTF,GFUNC,GDATTIM,GLEVEL,GVCORD,GRDNAM,
> >> GRDTYP,GPACK,GRDHDR,PROJ,GRDAREA,KXKY,MAXGRD,CPYFIL,ANLYSS.
> >> GEMPAK-GDDIAG>
> >>
> >> BUT...if I then just go and do gdinfo on the file being used,
> >>
> >> GEMPAK-GDINFO>l
> >> GDFILE   = gfdl_fut_comp_test_d02_f0500_pres.gem
> >> LSTALL   = YES
> >> OUTPUT   = T
> >> GDATTIM  = f05
> >> GLEVEL   = 800
> >> GVCORD   = pres
> >> GFUNC    = wg
> >> GEMPAK-GDINFO>r
> >>
> >> GRID FILE: gfdl_fut_comp_test_d02_f0500_pres.gem
> >>
> >> GRID NAVIGATION:
> >> PROJECTION:          LCC
> >> ANGLES:                39.2  -102.7    39.2
> >> GRID SIZE:          573 600
> >> LL CORNER:              35.38   -108.90
> >> UR CORNER:              42.71   -100.26
> >>
> >> GRID ANALYSIS BLOCK:
> >> ANALYSIS TYPE:        BARNES
> >> DELTAN:               0.028
> >> DELTAX:           -9999.000
> >> DELTAY:           -9999.000
> >> GRID AREA:            34.00 -111.00   44.00  -99.00
> >> EXTEND AREA:          34.00 -111.00   44.00  -99.00
> >> DATA AREA:            34.00 -111.00   44.00  -99.00
> >>
> >> Number of grids in file:   389
> >>
> >> Maximum number of grids in file:  29999
> >>
> >> NUM       TIME1              TIME2           LEVL1 LEVL2  VCORD PARM
> >> 67     400716/0000F005                        800         PRES WG
> >> Parameters requested: GDFILE,LSTALL,OUTPUT,GDATTIM,GLEVEL,GVCORD,GFUNC.
> >> GEMPAK-GDINFO>
> >>
> >>
> >> ....there it is!
> >> The grid is there, but gddiag insists that it's not.
> >> I know my gempak might be getting rusty from under-use lately, but I'm
> >> drawing a blank here, and would at a minimum, be able to tell my cluster
> >> folks if they've installed the correct version of gempak and done so
> >> correctly.
> >>
> >> Thank you for any insight you might be able to offer!
> >> Best,
> >> Kelly
> >>
> >>
> >>
> >>
> >>
> >>
> >> On 12/30/2010 1:46 PM, Unidata GEMPAK Support wrote:
> >>> Kelly,
> >>>
> >>> I confirmed GDDIAG correctly creates the new file and adds the grid WG to 
> >>> the file with 6.2.0.  Hopefully you are able to update from 5.11.4 to 
> >>> 6.2.0 without any major problems, but if you encounter anything 
> >>> problematic let me know and I'll assist you.
> >>>
> >>>    GDFILE   = gfdl_fut_comp_test_d02_f0500_pres.gem
> >>>    GDOUTF   = gfdl_fut_comp_d02_f0500_pres_full.gem
> >>>    GFUNC    = WG
> >>>    GDATTIM  = 400716/0000F005
> >>>    GLEVEL   = 800
> >>>    GVCORD   = pres
> >>>    GRDNAM   =
> >>>    GRDTYP   =
> >>>    GPACK    =
> >>>    GRDHDR   =
> >>>    PROJ     =
> >>>    GRDAREA  =
> >>>    KXKY     =
> >>>    MAXGRD   = 99999
> >>>    CPYFIL   = gfdl_fut_comp_test_d02_f0500_pres.gem
> >>>    ANLYSS   =
> >>>    GEMPAK-GDDIAG>R
> >>>
> >>>       TIME1             TIME2         LEVL1 LEVL2   VCORD PARM
> >>> 400716/0000F005                       800          PRES WG
> >>> Enter a new grid parameter name,<cr>   to accept or type EXIT:
> >>>
> >>>
> >>> Best,
> >>>
> >>> Michael
> >>>
> >>>
> >>>> Hi Michael,
> >>>> Thank you so much for your fast reply.
> >>>> I just uploaded three files to the repository -- the two files I'm
> >>>> trying to combine, and the script I'm trying to use (however, the seg
> >>>> fault occurs when just running interactively and adding one grid at a
> >>>> single level too).
> >>>> Thanks again very much for your help,
> >>>> Kelly
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> On 12/30/2010 1:33 PM, Unidata GEMPAK Support wrote:
> >>>>> Hi Kelly,
> >>>>>
> >>>>> With the information provided I can't tell if you're experiencing the 
> >>>>> problems reported with 5.11.4 (due to a bug in the grid diagnostics 
> >>>>> libraries) or if you're experiencing something different.
> >>>>>
> >>>>> My first suggestion would be to upgrade to 6.2.0 and try the exact same 
> >>>>> process.  Other than that, I would need a copy of your GDFILE 
> >>>>> (gfdl_fut_comp_test_d02_f0500_pres.gem) to test on my system here.
> >>>>>
> >>>>> If possible, could you upload this file to the RAMADDA GEMPAK 
> >>>>> repository located at
> >>>>>
> >>>>> http://motherlode.ucar.edu/repository/alias/gempakuploads/
> >>>>>
> >>>>> Best,
> >>>>>
> >>>>> Michael James
> >>>>> Unidata
> >>>>>
> >>>>>
> >>>>>
> >>>>>> Hi,
> >>>>>>
> >>>>>> I am trying to run GDDIAG on the system listed below, but whenever I 
> >>>>>> try
> >>>>>> to write a grid to a file, it segmentation faults with no other error.
> >>>>>>
> >>>>>> While searching around for a solution, I came across some gempak 
> >>>>>> support
> >>>>>> threads that mention a past issue with RH5 and gfortran, which I think
> >>>>>> is what I'm using...but I can't tell what the solution to the problem 
> >>>>>> is
> >>>>>> (or if that is even my problem)?
> >>>>>>
> >>>>>> The version is 5.11.4, and it was installed on the system below in June
> >>>>>> 2010.
> >>>>>>
> >>>>>> Thanks in advance for any help or suggestions you may be able to offer!
> >>>>>> Kelly Mahoney
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> [kmahoney@fe1 CFAD]$ uname -a
> >>>>>> Linux fe1 2.6.18-194.11.4.el5-perfctr #1 SMP Wed Oct 27 18:35:31 GMT
> >>>>>> 2010 x86_64 x86_64 x86_64 GNU/Linux
> >>>>>>
> >>>>>> [kmahoney@fe1 CFAD]$ gcc --version
> >>>>>> gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48)
> >>>>>> Copyright (C) 2006 Free Software Foundation, Inc.
> >>>>>> This is free software; see the source for copying conditions.  There 
> >>>>>> is NO
> >>>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR 
> >>>>>> PURPOSE.
> >>>>>>
> >>>>>>>     GEMPAK-GDDIAG>l
> >>>>>>>     GDFILE   = gfdl_fut_comp_test_d02_f0500_pres.gem
> >>>>>>>     GDOUTF   = gfdl_fut_comp_d02_f0500_pres_full.gem
> >>>>>>>     GFUNC    = WG
> >>>>>>>     GDATTIM  = 400716/0000F005
> >>>>>>>     GLEVEL   = 800
> >>>>>>>     GVCORD   = pres
> >>>>>>>     GRDNAM   =
> >>>>>>>     GRDTYP   =
> >>>>>>>     GPACK    =
> >>>>>>>     GRDHDR   =
> >>>>>>>     PROJ     =
> >>>>>>>     GRDAREA  =
> >>>>>>>     KXKY     =
> >>>>>>>     MAXGRD   = 99999
> >>>>>>>     CPYFIL   = gfdl_fut_comp_test_d02_f0500_pres.gem
> >>>>>>>     ANLYSS   =
> >>>>>>>     GEMPAK-GDDIAG>r
> >>>>>>> Segmentation fault
> >>>>>>
> >>>>>>> Kelly,
> >>>>>>>
> >>>>>>> I  have solved the problem with GEMPAK and I was able to link your
> >>>>>>> code.  I have installed GEMPAK 5.11.4 on the system.  You will have to
> >>>>>>> logout and login again to get the environment set correctly to use it.
> >>>>>>>
> >>>>>>> The variable $GEMPAK is defined as the base directory.  To
> >>>>>>> link against the libraries, use $GEMPAKLIB.  Both $GEMPAK/bin
> >>>>>>> and $GEMPAK/os/linux64/bin are on the path by default.
> >>>>>>>
> >>>>>>> Craig
> >>>>>>>
> >>>>> Ticket Details
> >>>>> ===================
> >>>>> Ticket ID: AWI-238233
> >>>>> Department: Support GEMPAK
> >>>>> Priority: Normal
> >>>>> Status: Open
> >>>>>
> >>> Ticket Details
> >>> ===================
> >>> Ticket ID: AWI-238233
> >>> Department: Support GEMPAK
> >>> Priority: Normal
> >>> Status: Open
> >>>
> >>>
> >>
> >
> > Ticket Details
> > ===================
> > Ticket ID: AWI-238233
> > Department: Support GEMPAK
> > Priority: Normal
> > Status: Open
> >
> 
> 


Ticket Details
===================
Ticket ID: AWI-238233
Department: Support GEMPAK
Priority: Normal
Status: Open