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Re: 20050520: Unidata decoders - syn2nc bug re Unicode (cont.)
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- Subject: Re: 20050520: Unidata decoders - syn2nc bug re Unicode (cont.)
- Date: Fri, 20 May 2005 09:12:16 -0600 (MDT)
On Fri, 20 May 2005, Unidata Support wrote: > > ------- Forwarded Message > > >To: <address@hidden> > >From: "Hanson, Kurt" <address@hidden> > >Subject: FW: Unidata decoders - syn2nc bug re Unicode > >Organization: WSI > >Keywords: 200505201415.j4KEFOP3013416 netCDF decoders syn2nc > > This is a multi-part message in MIME format. > > ------_=_NextPart_001_01C55D46.5A42735C > Content-Type: multipart/alternative; > boundary="----_=_NextPart_002_01C55D46.5A42735C" > > > ------_=_NextPart_002_01C55D46.5A42735C > Content-Type: text/plain; > charset="Windows-1252" > Content-Transfer-Encoding: quoted-printable > > I haven't received a response to this. Does that mean its still in a = i consider this very important, been working on a new release but other projects have deverted time. thanks. robb... > queue or that the issue is not considered important? > > Just curious -- > > Kurt Hanson > WSI Corporation > 400 Minuteman Rd. > Andover, MA 01810 > (978).983.6549 > www.wsi.com > > > > -----Original Message----- > > From: Hanson, Kurt =20 > > Sent: Wednesday, April 20, 2005 1:20 PM > > To: 'address@hidden' > > Subject: Unidata decoders - syn2nc bug re Unicode > >=20 > > I imagine this will end up in Rob Kambic's inbox... if so, hello again = > Rob. > >=20 > > We've been occasionally experiencing issues with syn2nc. The problem = > is that once every week or two, the syn2nc log will suddenly begin = > filling with messages about Unicode: > >=20 > > Malformed UTF-8 character (unexpected continuation byte 0x8e, with no = > preceding start byte) in index at /dicast2-papp/DICAST/tmp/syn2nc_308 = > line 618, <STDIN> chunk 1. > > Malformed UTF-8 character (unexpected non-continuation byte 0x2a, = > immediately after start byte 0xf6) in index at = > /dicast2-papp/DICAST/tmp/syn2nc_308 line 618, <STDIN> chunk 1. > >=20 > > The log file grows without bound until finally the disk partition = > fills, hobbling the entire system. > >=20 > > I think I understand the problem and have a fix. The problem appears = > to be due to some garbage characters in several of the synoptic messages = > from today for a single site -- FBSK in Botswana. (I imagine that all of = > the problems we've ever seen are from this site.) > >=20 > > The issue is that since 5.8.0, Perl has some automatic support for = > handling Unicode characters. Once Perl sees a character outside of the = > range [0,127], it assumes that the text data is Unicode rather than = > ASCII. Since the garbage characters from today's FBSK data did not = > conform to Unicode rules, Perl itself (rather than syn2nc) generated the = > messages. > >=20 > > So the magic fix I installed is to put a "no encoding;" line (pragma) = > into the syn2nc script. This ensures that Perl doesn't try to guess what = > sort of character set the text is in -- it just passes the data up to = > the application level in raw form. That's what we need with syn2nc. > >=20 > > Scope: > > * We experience this problem on a Linux RedHat Enterprise 3.0 Athlon = > system running Perl 5.8.0. > > * We do not experience it on a Solaris 8 system running Perl 5.8.0. > >=20 > > Testing: > > When I pipe the attached synoptic file = > synoptic.20050420.1200.asc.FBSK_210 into the pristine syn2nc on the = > Linux system, the log file grows without bound. When I pipe it into my = > patched version, the log file size remains stable, and the file never = > gets any Unicode error messages. > >=20 > > Discussion: > > Thinking beyond the low-level Perl issue, I'm not sure what syn2nc = > should do when it encounters the garbage characters... Nor am I sure = > what it actually does -- I'd dig into the script itself to find that out = > but I'm running short on time. What do you think? > >=20 > > Also, I'd be curious to hear whether you see the garbage characters in = > your FBSK synoptics for today. Its possible but unlikely that the = > garbage is not due to the FBSK sensor itself but due to some = > communications issue that is WSI-specific. > >=20 > > I'm attaching a few things: > > * syn2nc.new -- an updated version of syn2nc from the 3.0.9 version of = > the decoders package. > > * syn2nc.patch -- a diff of my version vs the pristine 3.0.9 > > * synoptic.20050420.1200.asc.FBSK_210 -- message #210 from today's = > synoptic feed, containing garbage characters 0x8e and others in line 6 = > of the file. > >=20 > > Relevant Perl references: > > * Unicode intro: http://perldoc.perl.org/perluniintro.html > > * encoding pragma: http://perldoc.perl.org/encoding.html > >=20 > > Whew. I think that's about everything! Feel free to contact me. > >=20 > > Kurt Hanson > > Senior Software Engineer & Scientific Analyst > > WSI Corporation > > 400 Minuteman Rd. > > Andover, MA 01810 > > my phone: 978.983.6549 > > www.wsi.com > >=20 > > > <<syn2nc.new>> > > <<syn2nc.patch>> > > = > <<synoptic.20050420.1200.asc.FBSK_210>>=20 > >=20 > >=20 > >=20 > > ------_=_NextPart_002_01C55D46.5A42735C > Content-Type: text/html; > charset="Windows-1252" > Content-Transfer-Encoding: quoted-printable > > <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> > <HTML> > <HEAD> > <META HTTP-EQUIV=3D"Content-Type" CONTENT=3D"text/html; = > charset=3DWindows-1252"> > <META NAME=3D"Generator" CONTENT=3D"MS Exchange Server version = > 6.5.7226.0"> > <TITLE>FW: Unidata decoders - syn2nc bug re Unicode</TITLE> > </HEAD> > <BODY> > <!-- Converted from text/rtf format --> > > <P><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Arial">I haven't received a = > response to this. Does that mean its still in a queue or that the issue = > is not considered important?</FONT></P> > > <P><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Arial">Just curious = > --</FONT> > </P> > > <P><FONT COLOR=3D"#000000" SIZE=3D2 FACE=3D"Arial">Kurt Hanson</FONT> > > <BR><FONT SIZE=3D2 FACE=3D"Arial">WSI Corporation</FONT> > > <BR><FONT SIZE=3D2 FACE=3D"Arial">400 Minuteman Rd.</FONT> > > <BR><FONT SIZE=3D2 FACE=3D"Arial">Andover, MA 01810</FONT> > > <BR><FONT SIZE=3D2 FACE=3D"Arial">(978).983.6549</FONT> > > <BR><FONT SIZE=3D2 FACE=3D"Arial">www.wsi.com</FONT> > </P> > <BR> > > <P><FONT FACE=3D"Arial"><SPAN LANG=3D"en-us"></SPAN></FONT><SPAN = > LANG=3D"en-us"> <FONT SIZE=3D1 FACE=3D"Tahoma">-----Original = > Message-----</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><B><FONT SIZE=3D1 FACE=3D"Tahoma">From: = > </FONT></B> <FONT SIZE=3D1 FACE=3D"Tahoma">Hanson, Kurt = > </FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><B><FONT SIZE=3D1 = > FACE=3D"Tahoma">Sent: </FONT></B> <FONT SIZE=3D1 = > FACE=3D"Tahoma">Wednesday, April 20, 2005 1:20 PM</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><B><FONT SIZE=3D1 = > FACE=3D"Tahoma">To: </FONT></B> <FONT SIZE=3D1 = > FACE=3D"Tahoma">'address@hidden'</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><B><FONT SIZE=3D1 = > FACE=3D"Tahoma">Subject: </FONT>= > </B> <FONT SIZE=3D1 FACE=3D"Tahoma">Unidata decoders - syn2nc bug re = > Unicode</FONT></SPAN> > </P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">I imagine this = > will end up in Rob Kambic's inbox... if so, hello again = > Rob.</FONT></SPAN> > </P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">We've been = > occasionally experiencing issues with syn2nc. The problem is that once = > every week or two, the syn2nc log will suddenly begin filling with = > messages about Unicode:</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New">Malformed = > UTF-8 character (unexpected continuation byte 0x8e, with no preceding = > start byte) in index at /dicast2-papp/DICAST/tmp/syn2nc_308 line 618, = > <STDIN> chunk 1.</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New">Malformed = > UTF-8 character (unexpected non-continuation byte 0x2a, immediately = > after start byte 0xf6) in index at /dicast2-papp/DICAST/tmp/syn2nc_308 = > line 618, <STDIN> chunk 1.</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">The log file grows = > without bound until finally the disk partition fills, hobbling the = > entire system.</FONT></SPAN> > </P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">I think I = > understand the problem and have a fix. The problem appears to be due to = > some garbage characters in several of the synoptic messages from today = > for a single site -- FBSK in Botswana. (I imagine that all of the = > problems we've ever seen are from this site.)</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">The issue is that = > since 5.8.0, Perl has some automatic support for handling Unicode = > characters. Once Perl sees a character outside of the range [0,127], it = > assumes that the text data is Unicode rather than ASCII. Since the = > garbage characters from today's FBSK data did not conform to Unicode = > rules, Perl itself (rather than syn2nc) generated the = > messages.</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">So the magic fix I = > installed is to put a "no encoding;" line (pragma) into the = > syn2nc script. This ensures that Perl doesn't try to guess what sort of = > character set the text is in -- it just passes the data up to the = > application level in raw form. That's what we need with = > syn2nc.</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 = > FACE=3D"Arial">Scope:</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">* We experience = > this problem on a Linux RedHat Enterprise 3.0 Athlon system running Perl = > 5.8.0.</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">* We do not = > experience it on a Solaris 8 system running Perl 5.8.0.</FONT></SPAN> > </P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 = > FACE=3D"Arial">Testing:</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">When I pipe the = > attached synoptic file synoptic.20050420.1200.asc.FBSK_210 into the = > pristine syn2nc on the Linux system, the log file grows without bound. = > When I pipe it into my patched version, the log file size remains = > stable, and the file never gets any Unicode error = > messages.</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 = > FACE=3D"Arial">Discussion:</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">Thinking beyond = > the low-level Perl issue, I'm not sure what syn2nc should do when it = > encounters the garbage characters... Nor am I sure what it actually does = > -- I'd dig into the script itself to find that out but I'm running short = > on time. What do you think?</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">Also, I'd be = > curious to hear whether you see the garbage characters in your FBSK = > synoptics for today. Its possible but unlikely that the garbage is not = > due to the FBSK sensor itself but due to some communications issue that = > is WSI-specific.</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">I'm attaching a = > few things:</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">* syn2nc.new -- = > an updated version of syn2nc from the 3.0.9 version of the decoders = > package.</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">* syn2nc.patch -- = > a diff of my version vs the pristine 3.0.9</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">* = > synoptic.20050420.1200.asc.FBSK_210 -- message #210 from today's = > synoptic feed, containing garbage characters 0x8e and others in line 6 = > of the file.</FONT></SPAN></P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">Relevant Perl = > references:</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">* Unicode intro: = > <A = > HREF=3D"http://perldoc.perl.org/perluniintro.html";>http://perldoc.perl.or= > g/perluniintro.html</A></FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">* encoding = > pragma: <A = > HREF=3D"http://perldoc.perl.org/encoding.html";>http://perldoc.perl.org/en= > coding.html</A></FONT></SPAN> > </P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">Whew. I think = > that's about everything! Feel free to contact me.</FONT></SPAN> > </P> > > <P><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">Kurt = > Hanson</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">Senior Software = > Engineer & Scientific Analyst</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">WSI = > Corporation</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">400 Minuteman = > Rd.</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">Andover, MA = > 01810</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">my phone: = > 978.983.6549</FONT></SPAN> > > <BR><SPAN LANG=3D"en-us"><FONT SIZE=3D2 = > FACE=3D"Arial">www.wsi.com</FONT></SPAN> > </P> > > <P><SPAN LANG=3D"en-us"><FONT FACE=3D"Arial" SIZE=3D2 COLOR=3D"#000000"> = > <<syn2nc.new>> </FONT><FONT FACE=3D"Arial" SIZE=3D2 = > COLOR=3D"#000000"> <<syn2nc.patch>> </FONT><FONT = > FACE=3D"Arial" SIZE=3D2 COLOR=3D"#000000"> = > 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If you do not want to have your interactions made > available in this way, you must let us know in each email you send to us. > > ------- End of Forwarded Message > =============================================================================== Robb Kambic Unidata Program Center Software Engineer III Univ. Corp for Atmospheric Research address@hidden WWW: http://www.unidata.ucar.edu/ ===============================================================================
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