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RE: Decoders
- Subject: RE: Decoders
- Date: Wed, 2 Feb 2005 11:17:30 -0700 (MST)
stephen,
finally some good news, decoders have been compiled and are working. the
udunits package needed to be rebuilt.
before you can use the commands the PATH variable needs to be set to:
[robb@ba141 data]$ echo $PATH
/usr/local/netcdf-3.6.0/bin:/usr/local/decoders-3.0.7/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:
so ncgen and ncdump can be found.
and also UDUNITS_PATH needs set
[robb@ba141 data]$ echo $UDUNITS_PATH
/usr/local/udunits-1.11.7/etc/udunits.dat
now there is a /usr/local/decoders-3.0.7/data dir for testing. the raw
files you had all had a length zero, not good. ftped a file from my site
for testing.
these are the commands:
% gribtocdl -v ruc2.t16z.grb2f01 > ruc2.t16z.cdl
% gribtonc -l - ruc2.t16z.cdl ruc2.t16z.nc < ruc2.t16z.grb2f01
% ncdump ruc2.t16z.nc | more
robb...
On Wed, 2 Feb 2005, Latimer, S wrote:
> Sounds fine (1730Z).
>
> Stephen
>
> Stephen Latimer
> Meteorology Graduate Student
> Texas Tech University ATMO
> Lubbock, TX 79409
>
> ________________________________
>
> From: Robb Kambic [mailto:address@hidden]
> Sent: Wed 2/2/2005 10:41
> To: Latimer, S
> Cc: decoders
> Subject: Re: Decoders
>
>
>
>
> stephen,
>
> didn't get a chance to login yesterday, how about today at 17:30 Z?
>
> robb...
>
>
> On Tue, 1 Feb 2005, Latimer, S wrote:
>
> > I tried to configure the decoders package again (after doing the previous
> > e-mailed operations on udunits) and could not find the gribtocdl and
> > gribtonc again.
> > If you need to access my computer, let me know so I can log off. Thanks,
> >
> > Stephen L.
> >
> > Stephen Latimer
> > Meteorology Graduate Student
> > Texas Tech University ATMO
> > Lubbock, TX 79409
> >
> >
> >
> > -----Original Message-----
> > From: Robb Kambic [mailto:address@hidden]
> > Sent: Mon 1/31/2005 18:05
> > To: Latimer, S
> > Subject: RE: Possible Errors
> >
> > thanks for permission changes
> >
> > the netcdf package worked ok, but the udunits now is the problem. can you
> > download it and build it.
> >
> > same commands as the ones used to build netcdf
> >
> >
> > robb...
> >
> >
> > On Mon, 31 Jan 2005, Latimer, S wrote:
> >
> > > I changed the ownership on the files by using the chown command. You
> > > should be able to access the files now.
> > >
> > > Stephen
> > >
> > > Stephen Latimer
> > > Meteorology Graduate Student
> > > Texas Tech University ATMO
> > > Lubbock, TX 79409
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Robb Kambic [mailto:address@hidden]
> > > Sent: Mon 1/31/2005 16:57
> > > To: Latimer, S
> > > Cc: decoders
> > > Subject: RE: Possible Errors
> > >
> > > On Mon, 31 Jan 2005, Latimer, S wrote:
> > >
> > > > I downloaded what I think is the src release (NetCDF Source Code,
> > > > V3.6.0 (netcdf.tar.Z) ). I then gunzipped and untarred it. Then I
> > > > followed the commands you listed below. After performing those
> > > > commands, I then attempted to re-execute the commands given previously
> > > > for the decoders package. It still gave the same erros.
> > > looks like the netcdf release built ok
> > > > Also, I think I gave you full permissions by changing the chmod of the
> > > > directory /usr/local. It looks as if you have rwx permissions on those
> > > > files.
> > >
> > > i still don't have permission to change the decoders file. a simple way to
> > > do it would be at /usr/local chown robb decoders-3.0.7 then at
> > >
> > > /usr/local/decoders-3.0.7 chown -R robb
> > >
> > > after you are up and running you can change the ownership back
> > >
> > > robb...
> > > >
> > > > Stephen
> > > >
> > > > Stephen Latimer
> > > > Meteorology Graduate Student
> > > > Texas Tech University ATMO
> > > > Lubbock, TX 79409
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Robb Kambic [mailto:address@hidden]
> > > > Sent: Mon 1/31/2005 14:55
> > > > To: Latimer, S
> > > > Cc: decoders
> > > > Subject: Re: Possible Errors
> > > >
> > > > On Mon, 31 Jan 2005, Latimer, S wrote:
> > > >
> > > > > I changed the directories as listed below in the CUSTOMIZE file.
> > > > > After running the command below, I found the following errors after
> > > > > executing the below commands:
> > > > >
> > > > > % make
> > > > >
> > > >
> > > > the problem is that the netcdf binary release you have is not
> > > > compatiable
> > > > with the decoders build. you need to download the netcdf src release and
> > > > build it. it usually builds 1st time. a couple of things,
> > > >
> > > > % CC=gcc;export CC
> > > > % FC="";export FC
> > > > % ./configure from src dir
> > > > % make
> > > > % make test
> > > > % make install
> > > >
> > > > my login didn't have any permissions so i couldn't fix any errors, all i
> > > > could do is look around for problems
> > > >
> > > > robb...
> > > >
> > > >
> > > > > In file included from gribtonc.c:24:
> > > > > nc.h:12:20: netcdf.h: No such file or directory
> > > > > In file included from gribtonc.c:24:
> > > > > nc.h:30: parse error before "nc_type"
> > > > > nc.h:30: warning: no semicolon at end of struct or union
> > > > > nc.h:36: parse error before '}' token
> > > > > nc.h:36: warning: data definition has no type or storage class
> > > > > nc.h:40: parse error before "nclong"
> > > > > nc.h:40: warning: no semicolon at end of struct or union
> > > > > nc.h:41: warning: data definition has no type or storage class
> > > > > nc.h:65: parse error before "lset"
> > > > > nc.h:65: warning: no semicolon at end of struct or union
> > > > > nc.h:66: warning: data definition has no type or storage class
> > > > > nc.h:69: parse error before '}' token
> > > > > nc.h:69: warning: data definition has no type or storage class
> > > > > nc.h:79: parse error before "ncvar"
> > > > > nc.h:79: warning: no semicolon at end of struct or union
> > > > > nc.h:83: parse error before "models"
> > > > > nc.h:83: warning: data definition has no type or storage class
> > > > > nc.h:84: parse error before '*' token
> > > > > nc.h:84: warning: data definition has no type or storage class
> > > > > nc.h:91: parse error before '}' token
> > > > > nc.h:91: warning: data definition has no type or storage class
> > > > > nc.h:106: parse error before '*' token
> > > > > nc.h:106: warning: data definition has no type or storage class
> > > > > nc.h:107: parse error before "ncfile"
> > > > > In file included from gribtonc.c:33:
> > > > > units.h:29: parse error before "ncfile"
> > > > > gribtonc.c: In function `do_nc':
> > > > > gribtonc.c:229: `ncp' undeclared (first use in this function)
> > > > > gribtonc.c:229: (Each undeclared identifier is reported only once
> > > > > gribtonc.c:229: for each function it appears in.)
> > > > > make[1]: *** [gribtonc.o] Error 1
> > > > > make[1]: Leaving directory `/usr/local/decoders-3.0.7/src/gribtonc'
> > > > > make: *** [gribtonc/all] Error 1
> > > > >
> > > > > % make test (not sure whether the below statements are indeed errors)
> > > > >
> > > > > which: no ncgen in
> > > > > (/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin
> > > > > :/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/X11R6/bin:/root/bin)
> > > > > metar tested ...... NOT OK
> > > > > ascii tested ...... NOT OK
> > > > > ldmConnect tested . NOT OK
> > > > > metar tested ...... NOT OK
> > > > > syn tested ........ NOT OK
> > > > > buoy tested ....... NOT OK
> > > > > upperair tested ... NOT OK
> > > > >
> > > > > % make install
> > > > >
> > > > > In file included from gribtonc.c:24:
> > > > > nc.h:12:20: netcdf.h: No such file or directory
> > > > > In file included from gribtonc.c:24:
> > > > > nc.h:30: parse error before "nc_type"
> > > > > nc.h:30: warning: no semicolon at end of struct or union
> > > > > nc.h:36: parse error before '}' token
> > > > > nc.h:36: warning: data definition has no type or storage class
> > > > > nc.h:40: parse error before "nclong"
> > > > > nc.h:40: warning: no semicolon at end of struct or union
> > > > > nc.h:41: warning: data definition has no type or storage class
> > > > > nc.h:65: parse error before "lset"
> > > > > nc.h:65: warning: no semicolon at end of struct or union
> > > > > nc.h:66: warning: data definition has no type or storage class
> > > > > nc.h:69: parse error before '}' token
> > > > > nc.h:69: warning: data definition has no type or storage class
> > > > > nc.h:79: parse error before "ncvar"
> > > > > nc.h:79: warning: no semicolon at end of struct or union
> > > > > nc.h:83: parse error before "models"
> > > > > nc.h:83: warning: data definition has no type or storage class
> > > > > nc.h:84: parse error before '*' token
> > > > > nc.h:84: warning: data definition has no type or storage class
> > > > > nc.h:91: parse error before '}' token
> > > > > nc.h:91: warning: data definition has no type or storage class
> > > > > nc.h:106: parse error before '*' token
> > > > > nc.h:106: warning: data definition has no type or storage class
> > > > > nc.h:107: parse error before "ncfile"
> > > > > In file included from gribtonc.c:33:
> > > > > units.h:29: parse error before "ncfile"
> > > > > gribtonc.c: In function `do_nc':
> > > > > gribtonc.c:229: `ncp' undeclared (first use in this function)
> > > > > gribtonc.c:229: (Each undeclared identifier is reported only once
> > > > > gribtonc.c:229: for each function it appears in.)
> > > > > make[3]: *** [gribtonc.o] Error 1
> > > > > make[3]: Leaving directory `/usr/local/decoders-3.0.7/src/gribtonc'
> > > > > make[2]: *** [installed_binfiles] Error 1
> > > > > make[2]: Leaving directory `/usr/local/decoders-3.0.7/src/gribtonc'
> > > > > make[1]: *** [installed_programs] Error 2
> > > > > make[1]: Leaving directory `/usr/local/decoders-3.0.7/src/gribtonc'
> > > > > make: *** [gribtonc/install] Error 1
> > > > >
> > > > >
> > > > > I then switched to the bin directory using 'cd ../bin' and ls with
> > > > > only gribdump and ncgen listed.
> > > > > Thanks again for all of your help.
> > > > >
> > > > > Stephen
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > Stephen Latimer
> > > > > Meteorology Graduate Student
> > > > > Texas Tech University ATMO
> > > > > Lubbock, TX 79409
> > > > >
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Robb Kambic [mailto:address@hidden]
> > > > > Sent: Mon 1/31/2005 13:39
> > > > > To: Latimer, S
> > > > > Cc: decoders
> > > > > Subject: RE: udunits and netCDF
> > > > >
> > > > >
> > > > > here's what i found.
> > > > >
> > > > > your /usr/local/decoders-3.0.7/src/CUSTOMIZE file has the wrong paths:
> > > > >
> > > > > you have
> > > > > CPP_NETCDF=/usr/local/netcdf/include
> > > > >
> > > > > should be
> > > > >
> > > > > CPP_NETCDF=/usr/local/netcdf-3.6.0/include
> > > > >
> > > > > again should be
> > > > >
> > > > > LD_NETCDF='-L/usr/local/netcdf-3.6.0/lib -lnetcdf'
> > > > >
> > > > > udunits likewise:
> > > > >
> > > > > CPP_UDUNITS=-I/usr/local/udunits-1.11.7/include
> > > > > LD_UDUNITS='-L/usr/local/udunits-1.11.7/lib -ludunits'
> > > > >
> > > > > do these commands:
> > > > >
> > > > > % cd /usr/local/decoders-3.0.7/src
> > > > > % rm config.log config.status
> > > > > % ./configure
> > > > > % make look for error messages
> > > > > % make test look for error messages/ perl decoders will fail,
> > > > > that's ok
> > > > > % make install
> > > > > % cd ../bin
> > > > > % ls should have gribdump gribtocdl gribtonc
> > > > > % UDUNITS_PATH=/usr/local/udunits-1.11.7/etc/udunits.dat;export
> > > > > UDUNITS_PATH
> > > > > % ls $UDUNITS_PATH should find file udunits.dat
> > > > >
> > > > >
> > > > > at this point you should be able to run the gribtonc with the
> > > > > invocation
> > > > > you did before. if it says file not found, prefix with ./
> > > > >
> > > > > robb...
> > > > > ===============================================================================
> > > > > Robb Kambic Unidata Program Center
> > > > > Software Engineer III Univ. Corp for Atmospheric
> > > > > Research
> > > > > address@hidden WWW: http://www.unidata.ucar.edu/
> > > > > ===============================================================================
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > > ===============================================================================
> > > > Robb Kambic Unidata Program Center
> > > > Software Engineer III Univ. Corp for Atmospheric
> > > > Research
> > > > address@hidden WWW: http://www.unidata.ucar.edu/
> > > > ===============================================================================
> > > >
> > > >
> > > >
> > > >
> > >
> > > ===============================================================================
> > > Robb Kambic Unidata Program Center
> > > Software Engineer III Univ. Corp for Atmospheric
> > > Research
> > > address@hidden WWW: http://www.unidata.ucar.edu/
> > > ===============================================================================
> > >
> > >
> > >
> > >
> >
> > ===============================================================================
> > Robb Kambic Unidata Program Center
> > Software Engineer III Univ. Corp for Atmospheric Research
> > address@hidden WWW: http://www.unidata.ucar.edu/
> > ===============================================================================
> >
> >
> >
> >
>
> ===============================================================================
> Robb Kambic Unidata Program Center
> Software Engineer III Univ. Corp for Atmospheric Research
> address@hidden WWW: http://www.unidata.ucar.edu/
> ===============================================================================
>
>
>
===============================================================================
Robb Kambic Unidata Program Center
Software Engineer III Univ. Corp for Atmospheric Research
address@hidden WWW: http://www.unidata.ucar.edu/
===============================================================================