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Re: decoders install problem

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  • Subject: Re: decoders install problem
  • Date: Mon, 8 Dec 2003 11:17:25 -0700 (MST)
On Mon, 8 Dec 2003, Enils Bashi wrote:

> Hi,
>
> I am trying to build the decoders-3.0.1 package on a RH 9 pentium 3 dual
> processor machine. I have built netcdf, ldm and udunits. I have edited the
> CUSTOMIZED folder but I am running into some problems with make. Here it is:
>
>
>
> making `all' in directory /data/decoders-3.0.1/src/gribtonc
>
> make[1]: Entering directory `/data/decoders-3.0.1/src/gribtonc'
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG emalloc.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG gbds.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG gbytem.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG gdes.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG get_prod.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG grib1.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG gribtypes.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG inetutil.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG levels.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG params.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG product_data.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG quasi.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG timeunits.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG user_param.c
> gcc -c -g -DNO_REPLACE_SYSLOG -DLOGNAME_ISSOCK
> -I/usr/local/netcdf-3.5.0/include
>  -I/data/udunits-1.11.7/include -DDEBUG ulog.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG centers.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG gribdump.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG models.c
> gcc -g emalloc.o gbds.o gbytem.o gdes.o get_prod.o grib1.o gribtypes.o
> inetutil.
> o levels.o params.o product_data.o quasi.o timeunits.o user_param.o ulog.o
> cente
> rs.o gribdump.o models.o  -lm  -o gribdump
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG gribtonc.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG mkdirs_open.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG nc.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG ncfloat.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG nuwg.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG recs.c
> gcc -c -g -I/usr/local/netcdf-3.5.0/include -I/data/udunits-1.11.7/include
> -DDEB
> UG units.c
> gcc -g emalloc.o gbds.o gbytem.o gdes.o get_prod.o grib1.o gribtypes.o
> inetutil.
> o levels.o params.o product_data.o quasi.o timeunits.o user_param.o ulog.o
> gribt
> onc.o mkdirs_open.o nc.o ncfloat.o nuwg.o recs.o units.o \
>       -L/usr/local/netcdf-3.5.0/lib -lnetcdf  -L/data/udunits-1.11.7/lib
> -luduni
> ts -ludport -lm  -o gribtonc
> /usr/local/netcdf-3.5.0/lib/libnetcdf.a(string.o)(.text+0x37): In function
> `NC_c
> heck_name':
> : undefined reference to `__ctype_b'
> /data/udunits-1.11.7/lib/libudunits.a(utlib.o)(.text+0xde6): In function
> `Decode
> Unit':
> : undefined reference to `__ctype_b'
> /data/udunits-1.11.7/lib/libudunits.a(utlib.o)(.text+0xe34): In function
> `Decode
> Unit':
> : undefined reference to `__ctype_b'
> /data/udunits-1.11.7/lib/libudunits.a(utlib.o)(.text+0xfaf): In function
> `ScanUn
> it':
> : undefined reference to `__ctype_b'
> collect2: ld returned 1 exit status
> make[1]: *** [gribtonc] Error 1
> make[1]: Leaving directory `/data/decoders-3.0.1/src/gribtonc'
> make: *** [gribtonc/all] Error 1
>
> Any and all feedback would be greatly appreciated

Enils,

From Steve Emmerson,

The symbol "__ctype_b" isn't directly referenced by either the netCDF
or the UDUNITS packages.  It is part of the GNU C 2.2 runtime: the
isdigit() family of C macros references it.  The symbol is not part of
the GNU C 2.3 runtime, however.  Consequently, code compiled by GNU C
2.2 that references the symbol can not link under GNU C 2.3.

I suspect this is their problem.

Regards,
Steve Emmerson

So the solution is to use the same version of the gcc compiler to compile
the packages netCDF, Udunits, and gribtonc.

% gcc -v

Robb...



>
>
> Enils Bashi
> Programmer - Chesapeake Bay Program
> Veridyne Incorporated
> Annapolis, Maryland: (410) 267-9833
> www.chesapeakebay.net
>
>
>

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Software Engineer III                      Univ. Corp for Atmospheric Research
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